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Sult6b2 sulfotransferase family 6B, member 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 500359, updated on 29-Feb-2024

Summary

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Official Symbol
Sult6b2provided by RGD
Official Full Name
sulfotransferase family 6B, member 2provided by RGD
Primary source
RGD:1561551
See related
Ensembl:ENSRNOG00000036959 AllianceGenome:RGD:1561551
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1561551
Summary
Predicted to enable sulfotransferase activity. Predicted to be involved in sulfation. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Heart (RPKM 3.4), Liver (RPKM 2.6) and 3 other tissues See more
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Genomic context

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Location:
4q44
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (177476813..177495377, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (175745824..175764400, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (177021141..177040776, complement)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene ATP binding cassette subfamily C member 9 Neighboring gene cytidine monophosphate N-acetylneuraminic acid synthetase Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 Neighboring gene uncharacterized LOC134486862

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables sulfotransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in sulfation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
sulfotransferase 1C2; sulfotransferase 6B1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    177476813..177495377 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_575715.8 → XP_575715.1  sulfotransferase 6B1 isoform X2

    See identical proteins and their annotated locations for XP_575715.1

    UniProtKB/TrEMBL
    D4AC92
    Related
    ENSRNOP00000052400.3
    Conserved Domains (1) summary
    pfam00685
    Location:37 → 275
    Sulfotransfer_1; Sulfotransferase domain

  2. XM_063286881.1 → XP_063142951.1  sulfotransferase 1C2 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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