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Ccdc24 coiled-coil domain containing 24 [ Rattus norvegicus (Norway rat) ]

Gene ID: 500534, updated on 5-Mar-2024

Summary

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Official Symbol
Ccdc24provided by RGD
Official Full Name
coiled-coil domain containing 24provided by RGD
Primary source
RGD:1562911
See related
Ensembl:ENSRNOG00000019586 AllianceGenome:RGD:1562911
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1562911
Summary
Predicted to act upstream of or within blastocyst hatching. Orthologous to human CCDC24 (coiled-coil domain containing 24). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 73.6), Brain (RPKM 41.3) and 6 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ccdc24 in Genome Data Viewer
Location:
5q36
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (136684206..136697855, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (131398766..131412395, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (136691655..136707197, complement)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134486978 Neighboring gene KLF transcription factor 17 Neighboring gene solute carrier family 6 member 9 Neighboring gene uncharacterized LOC120102957 Neighboring gene beta-1,4-galactosyltransferase 2 Neighboring gene ATPase H+ transporting V0 subunit B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Towards Functional Annotation of the Preimplantation Transcriptome: An RNAi Screen in Mammalian Embryos. Cui W, et al. Sci Rep, 2016 Nov 21. PMID 27869233, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
acts_upstream_of_or_within blastocyst hatching ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 24

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001134626.1 → NP_001128098.1  coiled-coil domain-containing protein 24

    See identical proteins and their annotated locations for NP_001128098.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474008
    UniProtKB/TrEMBL
    A6JZE8
    Conserved Domains (1) summary
    pfam15669
    Location:21 → 216
    CCDC24; Coiled-coil domain-containing protein 24 family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    136684206..136697855 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063288250.1 → XP_063144320.1  coiled-coil domain-containing protein 24 isoform X6

  2. XM_039110603.2 → XP_038966531.1  coiled-coil domain-containing protein 24 isoform X10

    Conserved Domains (1) summary
    pfam15669
    Location:21 → 143
    CCDC24; Coiled-coil domain-containing protein 24 family

  3. XM_008764054.3 → XP_008762276.1  coiled-coil domain-containing protein 24 isoform X5

    Conserved Domains (1) summary
    pfam15669
    Location:21 → 230
    CCDC24; Coiled-coil domain-containing protein 24 family

  4. XM_063288251.1 → XP_063144321.1  coiled-coil domain-containing protein 24 isoform X7

  5. XM_063288252.1 → XP_063144322.1  coiled-coil domain-containing protein 24 isoform X8

  6. XM_008764053.4 → XP_008762275.1  coiled-coil domain-containing protein 24 isoform X2

    Conserved Domains (1) summary
    pfam15669
    Location:21 → 226
    CCDC24; Coiled-coil domain-containing protein 24 family

  7. XM_008764052.4 → XP_008762274.1  coiled-coil domain-containing protein 24 isoform X1

    Conserved Domains (1) summary
    pfam15669
    Location:21 → 230
    CCDC24; Coiled-coil domain-containing protein 24 family

  8. XM_006238709.4 → XP_006238771.1  coiled-coil domain-containing protein 24 isoform X3

    Conserved Domains (1) summary
    pfam15669
    Location:21 → 220
    CCDC24; Coiled-coil domain-containing protein 24 family

  9. XM_006238710.4 → XP_006238772.1  coiled-coil domain-containing protein 24 isoform X4

    See identical proteins and their annotated locations for XP_006238772.1

    UniProtKB/TrEMBL
    A0A0G2K9U0, A6JZE6
    Related
    ENSRNOP00000075126.1
    Conserved Domains (1) summary
    pfam15669
    Location:21 → 216
    CCDC24; Coiled-coil domain-containing protein 24 family

  10. XM_063288253.1 → XP_063144323.1  coiled-coil domain-containing protein 24 isoform X9

Nucleotide Protein Strain
Heading Accession and Version

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