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Nhsl3 NHS like 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 500552, updated on 13-Apr-2024

Summary

Official Symbol
Nhsl3provided by RGD
Official Full Name
NHS like 3provided by RGD
Primary source
RGD:1561149
See related
Ensembl:ENSRNOG00000008113 AllianceGenome:RGD:1561149
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Hapstr1; RGD1561149
Summary
Predicted to be involved in cell differentiation. Orthologous to human KIAA1522 (KIAA1522). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Kidney (RPKM 61.5), Adrenal (RPKM 33.9) and 8 other tissues See more
Orthologs
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Genomic context

See Nhsl3 in Genome Data Viewer
Location:
5q36
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (146848747..146877504, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (141564399..141593154, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (147403948..147427587, complement)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene S100P binding protein Neighboring gene U6 spliceosomal RNA Neighboring gene tyrosyl-tRNA synthetase 1 Neighboring gene large ribosomal subunit protein uL23-like Neighboring gene syncoilin, intermediate filament protein Neighboring gene RB binding protein 4, chromatin remodeling factor

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
NHS like 3
Names
HUWE1 associated protein modifying stress responses
Nance-Horan syndrome protein like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001134629.2NP_001128101.1  NHS like 3 isoform 3

    See identical proteins and their annotated locations for NP_001128101.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000005
    UniProtKB/TrEMBL
    A6ISI0, D3ZQK5
    Related
    ENSRNOP00000010688.5, ENSRNOT00000010688.8
    Conserved Domains (1) summary
    PHA03247
    Location:722996
    PHA03247; large tegument protein UL36; Provisional
  2. NM_001415956.1NP_001402885.1  NHS like 3 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000005
    UniProtKB/TrEMBL
    A0A8I6B5N9
    Related
    ENSRNOP00000097368.1, ENSRNOT00000097184.1
  3. NM_001415958.1NP_001402887.1  NHS like 3 isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000005
    UniProtKB/TrEMBL
    A0A8I5ZS30
    Related
    ENSRNOP00000081359.1, ENSRNOT00000108263.1

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    146848747..146877504 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)