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Treml1 triggering receptor expressed on myeloid cells-like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 501096, updated on 30-Sep-2021

Summary

Official Symbol
Treml1provided by RGD
Official Full Name
triggering receptor expressed on myeloid cells-like 1provided by RGD
Primary source
RGD:1565175
See related
EnsemblRapid:ENSRNOG00000040109
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1565175
Expression
Biased expression in Spleen (RPKM 61.7), Lung (RPKM 9.1) and 1 other tissue See more
Orthologs
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Genomic context

See Treml1 in Genome Data Viewer
Location:
9q12
Exon count:
6
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (12635584..12642929, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (14597172..14603622, complement)

Chromosome 9 - NC_051344.1Genomic Context describing neighboring genes Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 2 Neighboring gene O-acyl-ADP-ribose deacylase 1 Neighboring gene nuclear transcription factor Y subunit alpha Neighboring gene triggering receptor expressed on myeloid cells 2 Neighboring gene uncharacterized LOC102548435

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables transmembrane signaling receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in calcium-mediated signaling ISO
Inferred from Sequence Orthology
more info
 
involved_in platelet activation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within platelet activation ISO
Inferred from Sequence Orthology
more info
 
involved_in platelet activation ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
located_in cell surface ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nuclear speck ISO
Inferred from Sequence Orthology
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in platelet alpha granule ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
trem-like transcript 1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001192001.1NP_001178930.1  trem-like transcript 1 protein precursor

    Status: PROVISIONAL

    Source sequence(s)
    JACYVU010000213
    Related
    ENSRNOP00000018138.6, ENSRNOT00000018138.7
    Conserved Domains (2) summary
    smart00410
    Location:22121
    IG_like; Immunoglobulin like
    cl11960
    Location:24106
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051344.1 Reference mRatBN7.2 Primary Assembly

    Range
    12635584..12642929 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039084059.1XP_038939987.1  trem-like transcript 1 protein isoform X1

    Conserved Domains (1) summary
    cd05716
    Location:22119
    IgV_pIgR_like; Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) and similar proteins
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