U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Cd200r1l CD200 receptor 1-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 501779, updated on 29-Feb-2024

Summary

Go to the top of the page Help
Official Symbol
Cd200r1lprovided by RGD
Official Full Name
CD200 receptor 1-likeprovided by RGD
Primary source
RGD:1563387
See related
Ensembl:ENSRNOG00000002046 AllianceGenome:RGD:1563387
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Cd200r2; RGD1563387
Summary
Predicted to enable signaling receptor activity. Predicted to be involved in regulation of neuroinflammatory response. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Orthologous to human CD200R1L (CD200 receptor 1 like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Spleen (RPKM 66.1), Liver (RPKM 36.0) and 3 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Cd200r1l in Genome Data Viewer
Location:
11q21
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (69348638..69366916, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (55842632..55860914, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (60803856..60828979, complement)

Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102551884 Neighboring gene thymosin beta-10-like Neighboring gene synaptotagmin binding, cytoplasmic RNA interacting protein, pseudogene 1 Neighboring gene CD200 receptor 1 Neighboring gene ribosomal oxygenase 2, pseudogene 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Structural and functional heterogeneity in the CD200R family of immunoregulatory molecules and their expression at the feto-maternal interface. Gorczynski RM, et al. Am J Reprod Immunol, 2004 Aug. PMID 15274657
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables signaling receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables signaling receptor activity ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in regulation of neuroinflammatory response IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in external side of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in external side of plasma membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

Go to the top of the page Help
Preferred Names
cell surface glycoprotein CD200 receptor 1-like
Names
Cd200 receptor 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086029.1 Reference GRCr8

    Range
    69348638..69366916 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008768757.4 → XP_008766979.1  cell surface glycoprotein CD200 receptor 1-like

    See identical proteins and their annotated locations for XP_008766979.1

    UniProtKB/TrEMBL
    D3ZJX0, D3ZPY4
    Conserved Domains (2) summary
    cd00096
    Location:41 → 46
    Ig; Ig strand A [structural motif]
    cl11960
    Location:41 → 147
    Ig; Immunoglobulin domain

  2. XM_008768755.4 → XP_008766977.1  cell surface glycoprotein CD200 receptor 1-like

    See identical proteins and their annotated locations for XP_008766977.1

    UniProtKB/TrEMBL
    D3ZJX0, D3ZPY4
    Conserved Domains (2) summary
    cd00096
    Location:41 → 46
    Ig; Ig strand A [structural motif]
    cl11960
    Location:41 → 147
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools
Miscellaneous