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nubp1 nucleotide binding protein 1 (MinD homolog, E. coli) [ Danio rerio (zebrafish) ]

Gene ID: 503919, updated on 16-Oct-2021

Summary

Official Symbol
nubp1provided by ZNC
Official Full Name
nucleotide binding protein 1 (MinD homolog, E. coli)provided by ZNC
Primary source
ZFIN:ZDB-GENE-050417-471
See related
Ensembl:ENSDARG00000055472
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:92138; im:7144207
Orthologs
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Genomic context

See nubp1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (26931710..26978811, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (26800839..26847940, complement)
103 previous assembly Zv9 (GCF_000002035.4) 3 NC_007114.5 (26039009..26086133)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene Dexi homolog (mouse) Neighboring gene class II, major histocompatibility complex, transactivator Neighboring gene epithelial membrane protein 2 Neighboring gene uncharacterized LOC108182821 Neighboring gene activating transcription factor 7 interacting protein 2

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Homology

Clone Names

  • MGC92138

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables iron-sulfur cluster binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables iron-sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 
enables iron-sulfur cluster binding ISS
Inferred from Sequence or Structural Similarity
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in iron-sulfur cluster assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within iron-sulfur cluster assembly IEA
Inferred from Electronic Annotation
more info
 
involved_in iron-sulfur cluster assembly IEA
Inferred from Electronic Annotation
more info
 
involved_in iron-sulfur cluster assembly ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytosol ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
cytosolic Fe-S cluster assembly factor nubp1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001017538.2NP_001017538.1  cytosolic Fe-S cluster assembly factor nubp1

    See identical proteins and their annotated locations for NP_001017538.1

    Status: VALIDATED

    Source sequence(s)
    CU695195, EH504704
    UniProtKB/Swiss-Prot
    Q6P298
    UniProtKB/TrEMBL
    A0A0R4I9D1
    Related
    ENSDARP00000129550.1, ENSDART00000155396.3
    Conserved Domains (2) summary
    COG0455
    Location:59317
    FlhG; MinD-like ATPase involved in chromosome partitioning or flagellar assembly [Cell cycle control, cell division, chromosome partitioning, Cell motility]
    pfam10609
    Location:56307
    ParA; NUBPL iron-transfer P-loop NTPase

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    26931710..26978811 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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