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PDXDC1 pyridoxal dependent decarboxylase domain containing 1 [ Bos taurus (cattle) ]

Gene ID: 505868, updated on 26-Jun-2021

Summary

Gene symbol
PDXDC1
Gene description
pyridoxal dependent decarboxylase domain containing 1
See related
Ensembl:ENSBTAG00000004801
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
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Genomic context

See PDXDC1 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
23
Annotation release Status Assembly Chr Location
106 current ARS-UCD1.2 (GCF_002263795.1) 25 NC_037352.1 (13731837..13786753, complement)
105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 25 AC_000182.1 (13824152..13879284, complement)

Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene RRN3 homolog, RNA polymerase I transcription factor Neighboring gene microRNA mir-562 Neighboring gene N-terminal asparagine amidase Neighboring gene MPV17 mitochondrial inner membrane protein like Neighboring gene bMERB domain containing 1 Neighboring gene uncharacterized LOC112444305

Genomic regions, transcripts, and products

General gene information

Homology

Clone Names

  • MGC179380

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables carboxy-lyase activity IEA
Inferred from Electronic Annotation
more info
 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in carboxylic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
pyridoxal-dependent decarboxylase domain-containing protein 1
NP_001095329.1
XP_010817588.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001101859.2NP_001095329.1  pyridoxal-dependent decarboxylase domain-containing protein 1

    See identical proteins and their annotated locations for NP_001095329.1

    Status: PROVISIONAL

    Source sequence(s)
    BC151480
    UniProtKB/Swiss-Prot
    A7MBC2
    Related
    ENSBTAP00000043763.2, ENSBTAT00000046463.3
    Conserved Domains (1) summary
    cl18945
    Location:204395
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD1.2 Primary Assembly

Genomic

  1. NC_037352.1 Reference ARS-UCD1.2 Primary Assembly

    Range
    13731837..13786753 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010819286.3XP_010817588.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X1

    Conserved Domains (1) summary
    cl18945
    Location:177368
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
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