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SUMF2 sulfatase modifying factor 2 [ Bos taurus (cattle) ]

Gene ID: 509497, updated on 5-Mar-2024

Summary

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Official Symbol
SUMF2provided by VGNC
Official Full Name
sulfatase modifying factor 2provided by VGNC
Primary source
VGNC:VGNC:35472
See related
BGD:BT11277; Ensembl:ENSBTAG00000008190
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 25
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 25 NC_037352.1 (27738614..27757513)

Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA22 Neighboring gene chaperonin containing TCP1 subunit 6A Neighboring gene small nucleolar RNA SNORA15 Neighboring gene phosphorylase kinase catalytic subunit gamma 1 Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 2 Neighboring gene nuclear protein 2, transcriptional regulator

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037352.1 Chromosome 25 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
  2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
  3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inactive C-alpha-formylglycine-generating enzyme 2
Names
C-alpha-formylglycine-generating enzyme 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001014881.1 → NP_001014881.1  inactive C-alpha-formylglycine-generating enzyme 2 precursor

    See identical proteins and their annotated locations for NP_001014881.1

    Status: PROVISIONAL

    Source sequence(s)
    BT021905
    UniProtKB/Swiss-Prot
    A6QPD0, Q58CP2
    Related
    ENSBTAP00000010773.4, ENSBTAT00000010773.6
    Conserved Domains (1) summary
    pfam03781
    Location:30 → 291
    FGE-sulfatase; Sulfatase-modifying factor enzyme 1

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037352.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    27738614..27757513
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010819404.4 → XP_010817706.1  inactive C-alpha-formylglycine-generating enzyme 2 isoform X2

    See identical proteins and their annotated locations for XP_010817706.1

    Conserved Domains (2) summary
    COG1262
    Location:30 → 264
    YfmG; Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain [Posttranslational modification, protein turnover, chaperones]
    pfam03781
    Location:30 → 274
    FGE-sulfatase; Sulfatase-modifying factor enzyme 1

  2. XM_059881231.1 → XP_059737214.1  inactive C-alpha-formylglycine-generating enzyme 2 isoform X2

  3. XM_059881230.1 → XP_059737213.1  inactive C-alpha-formylglycine-generating enzyme 2 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1M497
    Related
    ENSBTAP00000080446.1, ENSBTAT00000127482.1
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q58CP2.1 GenPept UniProtKB/Swiss-Prot:Q58CP2

Gene LinkOut

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