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ZNF93 zinc finger protein 93 [ Bos taurus (cattle) ]

Gene ID: 510078, updated on 5-Mar-2024

Summary

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Gene symbol
ZNF93
Gene description
zinc finger protein 93
See related
Ensembl:ENSBTAG00000017123
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
ZNF354B
Orthologs
human all
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Genomic context

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Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (3506096..3540806)

Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene synaptosome associated protein 47 Neighboring gene jumonji domain containing 4 Neighboring gene vomeronasal 2 receptor 401 pseudogene Neighboring gene uncharacterized LOC132345670 Neighboring gene vomeronasal 2 receptor 402 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC143044

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 93
Names
zinc finger protein 354A-like
zinc finger protein 354B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    3506096..3540806
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010806513.4 → XP_010804815.1  zinc finger protein 93 isoform X4

    Conserved Domains (2) summary
    smart00349
    Location:14 → 73
    KRAB; krueppel associated box
    pfam01352
    Location:14 → 53
    KRAB; KRAB box

  2. XM_059888495.1 → XP_059744478.1  zinc finger protein 93 isoform X2

    Related
    ENSBTAP00000096994.1, ENSBTAT00000112706.1

  3. XM_059888494.1 → XP_059744477.1  zinc finger protein 93 isoform X1

  4. XM_024994734.2 → XP_024850502.1  zinc finger protein 93 isoform X3

    Conserved Domains (1) summary
    smart00349
    Location:14 → 73
    KRAB; krueppel associated box

  5. XM_005208410.5 → XP_005208467.1  zinc finger protein 93 isoform X1

    See identical proteins and their annotated locations for XP_005208467.1

    UniProtKB/TrEMBL
    F1MEQ1
    Conserved Domains (5) summary
    smart00349
    Location:14 → 73
    KRAB; krueppel associated box
    COG5048
    Location:215 → 595
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:467 → 487
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:14 → 53
    KRAB; KRAB box
    pfam13465
    Location:367 → 392
    zf-H2C2_2; Zinc-finger double domain

  6. XM_024994735.2 → XP_024850503.1  zinc finger protein 93 isoform X3

    Related
    ENSBTAP00000068284.2, ENSBTAT00000073262.2
    Conserved Domains (1) summary
    smart00349
    Location:14 → 73
    KRAB; krueppel associated box

  7. XM_005208411.5 → XP_005208468.1  zinc finger protein 93 isoform X1

    See identical proteins and their annotated locations for XP_005208468.1

    UniProtKB/TrEMBL
    F1MEQ1
    Related
    ENSBTAP00000087692.1, ENSBTAT00000110211.1
    Conserved Domains (5) summary
    smart00349
    Location:14 → 73
    KRAB; krueppel associated box
    COG5048
    Location:215 → 595
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:467 → 487
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:14 → 53
    KRAB; KRAB box
    pfam13465
    Location:367 → 392
    zf-H2C2_2; Zinc-finger double domain

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001075429.1: Suppressed sequence

    Description
    NM_001075429.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from cow: ZNF354A (GeneID:524106).
Nucleotide Protein Strain
Heading Accession and Version

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