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TPCN1 two pore segment channel 1 [ Bos taurus (cattle) ]

Gene ID: 510830, updated on 4-Jul-2020

Summary

Official Symbol
TPCN1provided by VGNC
Official Full Name
two pore segment channel 1provided by VGNC
Primary source
VGNC:VGNC:36243
See related
BGD:BT12972; Ensembl:ENSBTAG00000011102
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
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Genomic context

See TPCN1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
31
Annotation release Status Assembly Chr Location
106 current ARS-UCD1.2 (GCF_002263795.1) 17 NC_037344.1 (61225929..61286475)
105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 17 AC_000174.1 (63498203..63561155)

Chromosome 17 - NC_037344.1Genomic Context describing neighboring genes Neighboring gene RBPJ interacting and tubulin associated 1 Neighboring gene IQ motif containing D Neighboring gene solute carrier family 8 member B1 Neighboring gene uncharacterized LOC112442046

Genomic regions, transcripts, and products

General gene information

Markers

Homology

General protein information

Preferred Names
two pore calcium channel protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD1.2 Primary Assembly

Genomic

  1. NC_037344.1 Reference ARS-UCD1.2 Primary Assembly

    Range
    61225929..61286475
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024977761.1XP_024833529.1  two pore calcium channel protein 1 isoform X4

    Conserved Domains (1) summary
    pfam00520
    Location:441692
    Ion_trans; Ion transport protein
  2. XM_024977757.1XP_024833525.1  two pore calcium channel protein 1 isoform X1

    Related
    ENSBTAP00000064586.1, ENSBTAT00000073198.1
    Conserved Domains (1) summary
    pfam00520
    Location:541792
    Ion_trans; Ion transport protein
  3. XM_024977758.1XP_024833526.1  two pore calcium channel protein 1 isoform X1

    Conserved Domains (1) summary
    pfam00520
    Location:541792
    Ion_trans; Ion transport protein
  4. XM_005218006.4XP_005218063.2  two pore calcium channel protein 1 isoform X1

    Conserved Domains (1) summary
    pfam00520
    Location:541792
    Ion_trans; Ion transport protein
  5. XM_024977759.1XP_024833527.1  two pore calcium channel protein 1 isoform X3

    Related
    ENSBTAP00000029529.4, ENSBTAT00000029530.4
    Conserved Domains (2) summary
    pfam00520
    Location:490741
    Ion_trans; Ion transport protein
    pfam12325
    Location:759829
    TMF_TATA_bd; TATA element modulatory factor 1 TATA binding
  6. XM_010814053.3XP_010812355.1  two pore calcium channel protein 1 isoform X2

    See identical proteins and their annotated locations for XP_010812355.1

    Conserved Domains (2) summary
    pfam00520
    Location:194382
    Ion_trans; Ion transport protein
    pfam12325
    Location:761831
    TMF_TATA_bd; TATA element modulatory factor 1 TATA binding
  7. XM_002694517.6XP_002694563.1  two pore calcium channel protein 1 isoform X4

    See identical proteins and their annotated locations for XP_002694563.1

    Related
    ENSBTAP00000057367.1, ENSBTAT00000085172.1
    Conserved Domains (1) summary
    pfam00520
    Location:441692
    Ion_trans; Ion transport protein
  8. XM_015475526.2XP_015331012.1  two pore calcium channel protein 1 isoform X5

    Conserved Domains (2) summary
    pfam00520
    Location:85273
    Ion_trans; Ion transport protein
    pfam12325
    Location:652722
    TMF_TATA_bd; TATA element modulatory factor 1 TATA binding
  9. XM_024977762.1XP_024833530.1  two pore calcium channel protein 1 isoform X6

    Conserved Domains (2) summary
    pfam00520
    Location:372623
    Ion_trans; Ion transport protein
    pfam12325
    Location:641711
    TMF_TATA_bd; TATA element modulatory factor 1 TATA binding
  10. XM_024977760.1XP_024833528.1  two pore calcium channel protein 1 isoform X4

    Conserved Domains (1) summary
    pfam00520
    Location:441692
    Ion_trans; Ion transport protein
  11. XM_010814054.3XP_010812356.1  two pore calcium channel protein 1 isoform X6

    See identical proteins and their annotated locations for XP_010812356.1

    Conserved Domains (2) summary
    pfam00520
    Location:372623
    Ion_trans; Ion transport protein
    pfam12325
    Location:641711
    TMF_TATA_bd; TATA element modulatory factor 1 TATA binding
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