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FOXP1 forkhead box P1 [ Bos taurus (cattle) ]

Gene ID: 515903, updated on 3-Apr-2024

Summary

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Official Symbol
FOXP1provided by VGNC
Official Full Name
forkhead box P1provided by VGNC
Primary source
VGNC:VGNC:29101
See related
BGD:BT11551; Ensembl:ENSBTAG00000016533
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 22
Exon count:
37
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 22 NC_037349.1 (30062278..30690217)

Chromosome 22 - NC_037349.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132343536 Neighboring gene prokineticin 2 Neighboring gene G protein-coupled receptor 27 Neighboring gene eukaryotic translation initiation factor 4E family member 3 Neighboring gene uncharacterized LOC132343537 Neighboring gene microRNA mir-1284 Neighboring gene uncharacterized LOC104976682 Neighboring gene uncharacterized LOC132343466 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037349.1 Chromosome 22 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC139185

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
forkhead box protein P1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001083689.1 → NP_001077158.1  forkhead box protein P1

    See identical proteins and their annotated locations for NP_001077158.1

    Status: PROVISIONAL

    Source sequence(s)
    BC134525
    UniProtKB/Swiss-Prot
    A4IFD2
    UniProtKB/TrEMBL
    A0A3Q1M116
    Related
    ENSBTAP00000021993.5, ENSBTAT00000021993.6
    Conserved Domains (2) summary
    cd00059
    Location:462 → 534
    FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
    pfam16159
    Location:300 → 367
    FOXP-CC; FOXP coiled-coil domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037349.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    30062278..30690217
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059879649.1 → XP_059735632.1  forkhead box protein P1 isoform X1

  2. XM_059879647.1 → XP_059735630.1  forkhead box protein P1 isoform X1

  3. XM_059879650.1 → XP_059735633.1  forkhead box protein P1 isoform X1

  4. XM_059879651.1 → XP_059735634.1  forkhead box protein P1 isoform X1

  5. XM_059879652.1 → XP_059735635.1  forkhead box protein P1 isoform X1

  6. XM_059879648.1 → XP_059735631.1  forkhead box protein P1 isoform X1

  7. XM_059879646.1 → XP_059735629.1  forkhead box protein P1 isoform X1

  8. XM_024982681.2 → XP_024838449.1  forkhead box protein P1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1M116
    Conserved Domains (2) summary
    cd00059
    Location:491 → 563
    FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
    pfam16159
    Location:328 → 395
    FOXP-CC; FOXP coiled-coil domain

  9. XM_024982682.2 → XP_024838450.1  forkhead box protein P1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1M116
    Conserved Domains (2) summary
    cd00059
    Location:491 → 563
    FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
    pfam16159
    Location:328 → 395
    FOXP-CC; FOXP coiled-coil domain

  10. XM_059879653.1 → XP_059735636.1  forkhead box protein P1 isoform X1

  11. XM_024982687.2 → XP_024838455.1  forkhead box protein P1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1M116
    Conserved Domains (2) summary
    cd00059
    Location:491 → 563
    FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
    pfam16159
    Location:328 → 395
    FOXP-CC; FOXP coiled-coil domain

  12. XM_024982689.2 → XP_024838457.1  forkhead box protein P1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q1M116
    Conserved Domains (2) summary
    cd00059
    Location:490 → 562
    FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
    pfam16159
    Location:328 → 395
    FOXP-CC; FOXP coiled-coil domain

  13. XM_024982688.2 → XP_024838456.1  forkhead box protein P1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q1M116
    Conserved Domains (2) summary
    cd00059
    Location:490 → 562
    FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
    pfam16159
    Location:327 → 394
    FOXP-CC; FOXP coiled-coil domain

  14. XM_005222651.5 → XP_005222708.1  forkhead box protein P1 isoform X4

    See identical proteins and their annotated locations for XP_005222708.1

    UniProtKB/TrEMBL
    A0A3Q1M116, A0A3Q1M437
    Conserved Domains (2) summary
    cd00059
    Location:463 → 535
    FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
    pfam16159
    Location:300 → 367
    FOXP-CC; FOXP coiled-coil domain

  15. XM_005222658.5 → XP_005222715.1  forkhead box protein P1 isoform X6

    See identical proteins and their annotated locations for XP_005222715.1

    UniProtKB/Swiss-Prot
    A4IFD2
    UniProtKB/TrEMBL
    A0A3Q1M116
    Conserved Domains (2) summary
    cd00059
    Location:462 → 534
    FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
    pfam16159
    Location:300 → 367
    FOXP-CC; FOXP coiled-coil domain

  16. XM_015459516.3 → XP_015315002.1  forkhead box protein P1 isoform X5

    UniProtKB/TrEMBL
    A0A3Q1M116
    Related
    ENSBTAP00000061757.2, ENSBTAT00000077766.2
    Conserved Domains (2) summary
    cd00059
    Location:462 → 534
    FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
    pfam16159
    Location:299 → 366
    FOXP-CC; FOXP coiled-coil domain

  17. XM_024982692.2 → XP_024838460.1  forkhead box protein P1 isoform X7

    UniProtKB/TrEMBL
    A0A3Q1M116
    Conserved Domains (2) summary
    cd00059
    Location:491 → 563
    FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
    pfam16159
    Location:328 → 395
    FOXP-CC; FOXP coiled-coil domain

  18. XM_059879645.1 → XP_059735628.1  forkhead box protein P1 isoform X1

  19. XM_059879654.1 → XP_059735637.1  forkhead box protein P1 isoform X1

  20. XM_059879655.1 → XP_059735638.1  forkhead box protein P1 isoform X1

  21. XM_059879656.1 → XP_059735639.1  forkhead box protein P1 isoform X1

  22. XM_024982686.2 → XP_024838454.1  forkhead box protein P1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1M116
    Conserved Domains (2) summary
    cd00059
    Location:491 → 563
    FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
    pfam16159
    Location:328 → 395
    FOXP-CC; FOXP coiled-coil domain

  23. XM_024982684.2 → XP_024838452.1  forkhead box protein P1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1M116
    Conserved Domains (2) summary
    cd00059
    Location:491 → 563
    FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
    pfam16159
    Location:328 → 395
    FOXP-CC; FOXP coiled-coil domain

  24. XM_059879657.1 → XP_059735640.1  forkhead box protein P1 isoform X1

  25. XM_024982697.2 → XP_024838465.1  forkhead box protein P1 isoform X8

    UniProtKB/TrEMBL
    A0A3Q1M116
    Conserved Domains (2) summary
    cd00059
    Location:364 → 436
    FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
    pfam16159
    Location:201 → 268
    FOXP-CC; FOXP coiled-coil domain

  26. XM_024982695.2 → XP_024838463.1  forkhead box protein P1 isoform X10

    UniProtKB/TrEMBL
    A0A3Q1M116
    Conserved Domains (2) summary
    cd00059
    Location:363 → 435
    FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
    pfam16159
    Location:201 → 268
    FOXP-CC; FOXP coiled-coil domain

  27. XM_024982694.2 → XP_024838462.1  forkhead box protein P1 isoform X9

    UniProtKB/TrEMBL
    A0A3Q1M116
    Conserved Domains (2) summary
    cd00059
    Location:363 → 435
    FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
    pfam16159
    Location:200 → 267
    FOXP-CC; FOXP coiled-coil domain

  28. XM_024982693.2 → XP_024838461.1  forkhead box protein P1 isoform X8

    UniProtKB/TrEMBL
    A0A3Q1M116
    Conserved Domains (2) summary
    cd00059
    Location:364 → 436
    FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
    pfam16159
    Location:201 → 268
    FOXP-CC; FOXP coiled-coil domain

  29. XM_024982696.2 → XP_024838464.1  forkhead box protein P1 isoform X9

    UniProtKB/TrEMBL
    A0A3Q1M116
    Conserved Domains (2) summary
    cd00059
    Location:363 → 435
    FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
    pfam16159
    Location:200 → 267
    FOXP-CC; FOXP coiled-coil domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A4IFD2.1 GenPept UniProtKB/Swiss-Prot:A4IFD2

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