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PCDHA13 protocadherin alpha 13 [ Bos taurus (cattle) ]

Gene ID: 523226, updated on 3-Apr-2024

Summary

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Gene symbol
PCDHA13
Gene description
protocadherin alpha 13
See related
BGD:BT19025; Ensembl:ENSBTAG00000053546
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human all
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Genomic context

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Location:
chromosome: 7
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (51895106..52104355)

Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene protocadherin alpha-1-like Neighboring gene protocadherin alpha-6 Neighboring gene protocadherin alpha-3-like Neighboring gene protocadherin alpha-7-like Neighboring gene protocadherin alpha-12-like Neighboring gene histone-binding protein RBBP4-like Neighboring gene dnaJ homolog subfamily B member 1-like Neighboring gene protocadherin beta 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC165970

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin alpha-13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001102506.2 → NP_001095976.1  protocadherin alpha-13 precursor

    See identical proteins and their annotated locations for NP_001095976.1

    Status: PROVISIONAL

    Source sequence(s)
    BC151664
    UniProtKB/TrEMBL
    A7E317, F1MJ94
    Conserved Domains (3) summary
    cd11304
    Location:246 → 346
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:30 → 111
    Cadherin_2; Cadherin-like
    pfam15974
    Location:799 → 942
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    51895106..52104355
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015472248.3 → XP_015327734.1  protocadherin alpha-13 isoform X6

    UniProtKB/TrEMBL
    G3MWT6
    Related
    ENSBTAP00000053991.3, ENSBTAT00000065348.3
    Conserved Domains (3) summary
    cd11304
    Location:246 → 346
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:30 → 111
    Cadherin_2; Cadherin-like
    pfam15974
    Location:798 → 941
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region

  2. XM_059888203.1 → XP_059744186.1  protocadherin alpha-13 isoform X7

  3. XM_059888204.1 → XP_059744187.1  protocadherin alpha-13 isoform X8

  4. XM_059888202.1 → XP_059744185.1  protocadherin alpha-13 isoform X2

    Related
    ENSBTAP00000055645.3, ENSBTAT00000063152.3

  5. XM_059888206.1 → XP_059744189.1  protocadherin alpha-13 isoform X10

  6. XM_015472247.3 → XP_015327733.1  protocadherin alpha-13 isoform X5

    Conserved Domains (3) summary
    cd11304
    Location:246 → 345
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:29 → 110
    Cadherin_2; Cadherin-like
    pfam15974
    Location:798 → 941
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region

  7. XM_015472246.3 → XP_015327732.1  protocadherin alpha-13 isoform X4

    Related
    ENSBTAP00000097267.1, ENSBTAT00000107838.1
    Conserved Domains (3) summary
    cd11304
    Location:246 → 345
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:30 → 111
    Cadherin_2; Cadherin-like
    pfam15974
    Location:798 → 941
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region

  8. XM_059888205.1 → XP_059744188.1  protocadherin alpha-13 isoform X9

    UniProtKB/TrEMBL
    A0A3Q1NKY7

  9. XM_015472244.3 → XP_015327730.1  protocadherin alpha-13 isoform X3

    Related
    ENSBTAP00000073046.2, ENSBTAT00000069968.2
    Conserved Domains (3) summary
    cd11304
    Location:349 → 441
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam15974
    Location:812 → 955
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
    cl09101
    Location:21 → 103
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

  10. XM_015472243.3 → XP_015327729.1  protocadherin alpha-13 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1MLE3
    Related
    ENSBTAP00000070100.1, ENSBTAT00000078839.2
    Conserved Domains (4) summary
    cd11304
    Location:257 → 357
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam15974
    Location:852 → 995
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
    pfam16492
    Location:699 → 804
    Cadherin_C_2; Cadherin cytoplasmic C-terminal
    cl09101
    Location:39 → 120
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
Nucleotide Protein Strain
Heading Accession and Version

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