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Vps37a vacuolar protein sorting 37A [ Mus musculus (house mouse) ]

Gene ID: 52348, updated on 23-Jun-2021

Summary

Official Symbol
Vps37aprovided by MGI
Official Full Name
vacuolar protein sorting 37Aprovided by MGI
Primary source
MGI:MGI:1261835
See related
Ensembl:ENSMUSG00000031600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AW261445; D8Ertd531; D8Ertd531e; 2210018P21Rik; 4930592A21Rik
Expression
Ubiquitous expression in cerebellum adult (RPKM 7.2), testis adult (RPKM 7.1) and 28 other tissues See more
Orthologs
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Genomic context

See Vps37a in Genome Data Viewer
Location:
8 A4; 8 23.89 cM
Exon count:
12
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (40964482..41004175)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (40511742..40551134)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (41597137..41636488)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene microRNA 7666 Neighboring gene mitochondrial calcium uptake family, member 3 Neighboring gene zinc finger, DHHC domain containing 2 Neighboring gene CCR4-NOT transcription complex, subunit 7 Neighboring gene myotubularin related protein 7 Neighboring gene a disintegrin and metallopeptidase domain 24 (testase 1) Neighboring gene high mobility group box 3 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
part_of ESCRT I complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of ESCRT I complex ISO
Inferred from Sequence Orthology
more info
 
located_in centrosome ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
vacuolar protein sorting-associated protein 37A
Names
ESCRT-I complex subunit VPS37A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_033560.3NP_291038.2  vacuolar protein sorting-associated protein 37A

    See identical proteins and their annotated locations for NP_291038.2

    Status: VALIDATED

    Source sequence(s)
    AC158915, AK016385, AK137479, BY085136, BY549007
    Consensus CDS
    CCDS22254.1
    UniProtKB/Swiss-Prot
    Q8CHS8
    UniProtKB/TrEMBL
    Q3UV99
    Related
    ENSMUSP00000096415.3, ENSMUST00000098817.4
    Conserved Domains (1) summary
    pfam07200
    Location:235376
    Mod_r; Modifier of rudimentary (Mod(r)) protein

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    40964482..41004175
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030243671.2XP_030099531.1  vacuolar protein sorting-associated protein 37A isoform X1

    Conserved Domains (1) summary
    pfam07200
    Location:89234
    Mod_r; Modifier of rudimentary (Mod(r)) protein

RNA

  1. XR_003947316.2 RNA Sequence

  2. XR_003947317.2 RNA Sequence

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