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Carhsp1 calcium regulated heat stable protein 1 [ Mus musculus (house mouse) ]

Gene ID: 52502, updated on 23-Jun-2021

Summary

Official Symbol
Carhsp1provided by MGI
Official Full Name
calcium regulated heat stable protein 1provided by MGI
Primary source
MGI:MGI:1196368
See related
Ensembl:ENSMUSG00000008393
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Crhsp-24; D16Ertd465; D16Ertd465e; 1200011K09Rik
Expression
Ubiquitous expression in adrenal adult (RPKM 133.4), ovary adult (RPKM 91.2) and 28 other tissues See more
Orthologs
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Genomic context

See Carhsp1 in Genome Data Viewer
Location:
16 A1; 16 4.26 cM
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (8476444..8490017, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (8658580..8672153, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (8658680..8672246, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene ferritin light chain 2 pseudogene Neighboring gene transmembrane protein 186 Neighboring gene phosphomannomutase 2 Neighboring gene predicted gene 5767 Neighboring gene ubiquitin specific peptidase 7 Neighboring gene predicted gene, 25805

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC101919

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables mRNA 3'-UTR binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables mRNA 3'-UTR binding ISO
Inferred from Sequence Orthology
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in regulation of mRNA stability IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in regulation of mRNA stability IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in P granule IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
part_of cytoplasmic exosome (RNase complex) IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
calcium-regulated heat stable protein 1
Names
calcineurin substrate CRHSP-24
calcium-regulated heat-stable protein of 24 kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025821.2NP_080097.1  calcium-regulated heat stable protein 1

    See identical proteins and their annotated locations for NP_080097.1

    Status: PROVISIONAL

    Source sequence(s)
    AK004711
    Consensus CDS
    CCDS27942.1
    UniProtKB/Swiss-Prot
    Q9CR86
    UniProtKB/TrEMBL
    Q5M9P7
    Related
    ENSMUSP00000008537.9, ENSMUST00000008537.10
    Conserved Domains (1) summary
    cd04458
    Location:64129
    CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    8476444..8490017 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006522347.3XP_006522410.1  calcium-regulated heat stable protein 1 isoform X2

    Conserved Domains (1) summary
    cd04458
    Location:90155
    CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
  2. XM_006522348.5XP_006522411.1  calcium-regulated heat stable protein 1 isoform X3

    Conserved Domains (1) summary
    cd04458
    Location:84149
    CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
  3. XM_006522346.4XP_006522409.2  calcium-regulated heat stable protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006522409.2

    UniProtKB/Swiss-Prot
    Q9CR86
    UniProtKB/TrEMBL
    Q5M9P7
    Conserved Domains (1) summary
    cd04458
    Location:64129
    CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
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