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LMO3 LIM domain only 3 [ Bos taurus (cattle) ]

Gene ID: 532870, updated on 3-Apr-2024

Summary

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Official Symbol
LMO3provided by VGNC
Official Full Name
LIM domain only 3provided by VGNC
Primary source
VGNC:VGNC:30935
See related
BGD:BT25058; Ensembl:ENSBTAG00000013541
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (93264607..93330594)

Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132345334 Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene transfer RNA asparagine (anticodon GUU) Neighboring gene C-terminal-binding protein 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC137301

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM domain only protein 3
Names
LIM domain only 3 (rhombotin-like 2)
LMO-3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001046337.2 → NP_001039802.1  LIM domain only protein 3

    See identical proteins and their annotated locations for NP_001039802.1

    Status: PROVISIONAL

    Source sequence(s)
    BC112712
    UniProtKB/Swiss-Prot
    Q2KIA3
    UniProtKB/TrEMBL
    A0A3Q1LNK4
    Related
    ENSBTAP00000040639.1, ENSBTAT00000043044.2
    Conserved Domains (2) summary
    cd09388
    Location:13 → 67
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77 → 131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    93264607..93330594
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005206982.3 → XP_005207039.1  LIM domain only protein 3 isoform X2

    See identical proteins and their annotated locations for XP_005207039.1

    UniProtKB/Swiss-Prot
    Q2KIA3
    UniProtKB/TrEMBL
    A0A3Q1LNK4
    Conserved Domains (2) summary
    cd09388
    Location:13 → 67
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77 → 131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)

  2. XM_059886521.1 → XP_059742504.1  LIM domain only protein 3 isoform X2

    UniProtKB/Swiss-Prot
    Q2KIA3

  3. XM_010805454.4 → XP_010803756.1  LIM domain only protein 3 isoform X2

    See identical proteins and their annotated locations for XP_010803756.1

    UniProtKB/Swiss-Prot
    Q2KIA3
    UniProtKB/TrEMBL
    A0A3Q1LNK4
    Conserved Domains (2) summary
    cd09388
    Location:13 → 67
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77 → 131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)

  4. XM_010805456.4 → XP_010803758.1  LIM domain only protein 3 isoform X2

    See identical proteins and their annotated locations for XP_010803758.1

    UniProtKB/Swiss-Prot
    Q2KIA3
    UniProtKB/TrEMBL
    A0A3Q1LNK4
    Conserved Domains (2) summary
    cd09388
    Location:13 → 67
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77 → 131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)

  5. XM_005206981.4 → XP_005207038.1  LIM domain only protein 3 isoform X1

    See identical proteins and their annotated locations for XP_005207038.1

    UniProtKB/TrEMBL
    A0A3Q1LNK4, A0A3Q1M8U8
    Related
    ENSBTAP00000068205.2, ENSBTAT00000070182.2
    Conserved Domains (2) summary
    cd09388
    Location:24 → 78
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:88 → 142
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2KIA3.1 GenPept UniProtKB/Swiss-Prot:Q2KIA3

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