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Rps28 ribosomal protein S28 [ Mus musculus (house mouse) ]

Gene ID: 54127, updated on 23-Jun-2021

Summary

Official Symbol
Rps28provided by MGI
Official Full Name
ribosomal protein S28provided by MGI
Primary source
MGI:MGI:1859516
See related
Ensembl:ENSMUSG00000067288
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in bladder adult (RPKM 320.6), CNS E11.5 (RPKM 303.0) and 28 other tissues See more
Orthologs
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Genomic context

See Rps28 in Genome Data Viewer
Location:
17; 17 B1
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (34042010..34043536, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (33823036..33824562, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (33959981..33961443, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene angiopoietin-like 4 Neighboring gene predicted gene, 53997 Neighboring gene KN motif and ankyrin repeat domains 3 Neighboring gene NADH:ubiquinone oxidoreductase subunit A7 Neighboring gene CD320 antigen

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables structural constituent of ribosome ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in cytoplasmic translation ISO
Inferred from Sequence Orthology
more info
 
involved_in maturation of SSU-rRNA IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in rRNA processing ISO
Inferred from Sequence Orthology
more info
 
involved_in ribosomal small subunit assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in ribosomal small subunit biogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in ribosome biogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol TAS
Traceable Author Statement
more info
 
part_of cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of cytosolic small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
located_in polysomal ribosome ISO
Inferred from Sequence Orthology
more info
 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001355384.1NP_001342313.1  40S ribosomal protein S28

    Status: VALIDATED

    Source sequence(s)
    CT030732
    Consensus CDS
    CCDS37571.1
    Related
    ENSMUSP00000133357.2, ENSMUST00000173844.8
    Conserved Domains (1) summary
    cd04457
    Location:1069
    S1_S28E; S28E, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. S28E protein is a component of the 30S ribosomal subunit. S28E is highly conserved among archaea and eukaryotes. S28E may control ...
  2. NM_016844.3NP_058540.1  40S ribosomal protein S28

    See identical proteins and their annotated locations for NP_058540.1

    Status: VALIDATED

    Source sequence(s)
    CT030732
    Consensus CDS
    CCDS37571.1
    UniProtKB/Swiss-Prot
    P62858
    UniProtKB/TrEMBL
    Q059I1
    Related
    ENSMUSP00000110013.5, ENSMUST00000087342.13
    Conserved Domains (1) summary
    cd04457
    Location:1069
    S1_S28E; S28E, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. S28E protein is a component of the 30S ribosomal subunit. S28E is highly conserved among archaea and eukaryotes. S28E may control ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    34042010..34043536 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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