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Tug1 taurine upregulated gene 1 [ Mus musculus (house mouse) ]

Gene ID: 544752, updated on 11-Jul-2021

Summary

Official Symbol
Tug1provided by MGI
Official Full Name
taurine upregulated gene 1provided by MGI
Primary source
MGI:MGI:2144114
See related
Ensembl:ENSMUSG00000056579
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AI316828
Expression
Ubiquitous expression in whole brain E14.5 (RPKM 12.7), placenta adult (RPKM 11.7) and 28 other tissues See more
Orthologs
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Genomic context

See Tug1 in Genome Data Viewer
Location:
11; 11 A1
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (3589785..3598814, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (3639785..3648814, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (3539797..3548811, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene microtubule-associated protein 1 light chain 3 copy 5 pseudogene Neighboring gene predicted gene 11951 Neighboring gene microrchidia 2A Neighboring gene nucleolar and spindle associated protein 1 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002321.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (a, also known as TUG1a) represents the shortest transcript.
    Source sequence(s)
    AL691413, BC057363, DQ517434
    Related
    ENSMUST00000144852.2
  2. NR_002322.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (b, also known as TUG1c) lacks an exon at the 5' end and contains alternate segments at both ends, resulting in a longer transcript, compared to variant a.
    Source sequence(s)
    AK048213, DQ517434
    Related
    ENSMUST00000132077.4
  3. NR_110490.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (c) differs at the 5' end, resulting in a longer transcript, compared to variant 1.
    Source sequence(s)
    AK165129, DQ517434
    Related
    ENSMUST00000153313.9

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    3589785..3598814 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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