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Ms4a15 membrane-spanning 4-domains, subfamily A, member 15 [ Mus musculus (house mouse) ]

Gene ID: 545279, updated on 5-Mar-2024

Summary

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Official Symbol
Ms4a15provided by MGI
Official Full Name
membrane-spanning 4-domains, subfamily A, member 15provided by MGI
Primary source
MGI:MGI:3617853
See related
Ensembl:ENSMUSG00000067571 AllianceGenome:MGI:3617853
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm1286; E530011F12Rik
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MS4A15 (membrane spanning 4-domains A15). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in frontal lobe adult (RPKM 10.4) and large intestine adult (RPKM 0.4) See more
Orthologs
human all
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Genomic context

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Location:
19 A; 19 7.47 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (10955667..10970614, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (10978303..10993299, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene prostaglandin D2 receptor 2 Neighboring gene STARR-positive B cell enhancer ABC_E5689 Neighboring gene coiled-coil domain containing 86 Neighboring gene membrane-spanning 4-domains, subfamily A, member 10 Neighboring gene STARR-seq mESC enhancer starr_45563 Neighboring gene STARR-positive B cell enhancer ABC_E11021 Neighboring gene STARR-positive B cell enhancer mm9_chr19:11054242-11054543 Neighboring gene membrane-spanning 4-domains, subfamily A, member 18 Neighboring gene predicted gene 28347

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in cell surface receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
membrane-spanning 4-domains subfamily A member 15

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001034898.2 → NP_001030070.1  membrane-spanning 4-domains subfamily A member 15 isoform 1

    See identical proteins and their annotated locations for NP_001030070.1

    Status: VALIDATED

    Source sequence(s)
    AK143446
    Consensus CDS
    CCDS29594.1
    UniProtKB/Swiss-Prot
    B2RVI3, Q3UPL6
    Related
    ENSMUSP00000085234.3, ENSMUST00000087923.4
    Conserved Domains (1) summary
    pfam04103
    Location:76 → 198
    CD20; CD20-like family

  2. NM_001404618.1 → NP_001391547.1  membrane-spanning 4-domains subfamily A member 15 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC148991

  3. NM_001404619.1 → NP_001391548.1  membrane-spanning 4-domains subfamily A member 15 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC148991

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    10955667..10970614 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3UPL6.1 GenPept UniProtKB/Swiss-Prot:Q3UPL6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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