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6820431F20Rik RIKEN cDNA 6820431F20 gene [ Mus musculus (house mouse) ]

Gene ID: 547150, updated on 23-Jun-2021

Summary

Official Symbol
6820431F20Rikprovided by MGI
Official Full Name
RIKEN cDNA 6820431F20 geneprovided by MGI
Gene description
cadherin 11 pseudogene
Primary source
MGI:MGI:3694236
See related
Ensembl:ENSMUSG00000071796
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in limb E14.5 (RPKM 56.4), CNS E18 (RPKM 42.7) and 27 other tissues See more
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Genomic context

See 6820431F20Rik in Genome Data Viewer
Location:
8; 8 A1.3
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (20143848..20172994)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (20268286..20297432, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (19863864..19893010, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein S7 pseudogene Neighboring gene POTE ankyrin domain family member 3A Neighboring gene NSFL1 (p97) cofactor (p47) pseudogene Neighboring gene predicted gene, 40468 Neighboring gene RIKEN cDNA 9530057J20 gene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_030708.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC152164
    Related
    ENSMUST00000153748.2

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    20143848..20172994
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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