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6820431F20Rik RIKEN cDNA 6820431F20 gene [ Mus musculus (house mouse) ]

Gene ID: 547150, updated on 8-Feb-2024

Summary

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Official Symbol
6820431F20Rikprovided by MGI
Official Full Name
RIKEN cDNA 6820431F20 geneprovided by MGI
Gene description
cadherin 11 pseudogene
Primary source
MGI:MGI:3694236
See related
Ensembl:ENSMUSG00000121492 AllianceGenome:MGI:3694236
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in limb E14.5 (RPKM 56.4), CNS E18 (RPKM 42.7) and 27 other tissues See more
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Genomic context

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Location:
8 A1.3; 8 10.35 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (20143848..20172994)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (20268286..20297432, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_20877 Neighboring gene ribosomal protein S7 pseudogene Neighboring gene POTE ankyrin domain family member 3A Neighboring gene STARR-seq mESC enhancer starr_20876 Neighboring gene STARR-seq mESC enhancer starr_20875 Neighboring gene STARR-seq mESC enhancer starr_20874 Neighboring gene NSFL1 (p97) cofactor (p47) pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr8:19856799-19857099 Neighboring gene predicted gene, 40468 Neighboring gene RIKEN cDNA 9530057J20 gene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  2. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 

General gene information

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Markers

Other Names

  • cadherin 11 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_030708.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC152164
    Related
    ENSMUST00000153748.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    20143848..20172994
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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