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zeb1 zinc finger E-box binding homeobox 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 548525, updated on 30-Sep-2021

Summary

Official Symbol
zeb1provided by Xenbase
Official Full Name
zinc finger E-box binding homeobox 1provided by Xenbase
Primary source
Xenbase:XB-GENE-484655
See related
EnsemblRapid:ENSXETG00000011655
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
bzp; zeb; tcf8; areb6; fecd6; nil2a; zfhep; zfhx1; nil-2a; zfhx1a; nil-2-a; deltaef1
Orthologs
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Genomic context

See zeb1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
12
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (23150775..23213344, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (14906463..14967919, complement)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene kinesin family member 5B Neighboring gene Rho GTPase activating protein 12 Neighboring gene zinc finger protein 438 Neighboring gene supervillin

Genomic regions, transcripts, and products

General gene information

Homology

Clone Names

  • MGC97552

General protein information

Preferred Names
zinc finger E-box-binding homeobox 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001015808.1NP_001015808.1  zinc finger E-box-binding homeobox 1

    See identical proteins and their annotated locations for NP_001015808.1

    Status: PROVISIONAL

    Source sequence(s)
    BC090088
    UniProtKB/TrEMBL
    Q5EB46
    Conserved Domains (6) summary
    smart00389
    Location:558606
    HOX; Homeodomain
    COG5048
    Location:898951
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:875895
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:221243
    zf-C2H2; Zinc finger, C2H2 type
    pfam08690
    Location:9151
    GET2; GET complex subunit GET2
    pfam13465
    Location:915940
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    23150775..23213344 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012964650.3XP_012820104.1  zinc finger E-box-binding homeobox 1 isoform X1

    Conserved Domains (6) summary
    smart00355
    Location:203225
    ZnF_C2H2; zinc finger
    smart00389
    Location:580633
    HOX; Homeodomain
    sd00017
    Location:897917
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:243265
    zf-C2H2; Zinc finger, C2H2 type
    pfam08690
    Location:120173
    GET2; GET complex subunit GET2
    pfam13465
    Location:937962
    zf-H2C2_2; Zinc-finger double domain
  2. XM_031903368.1XP_031759228.1  zinc finger E-box-binding homeobox 1 isoform X3

    Conserved Domains (4) summary
    sd00017
    Location:691711
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:3759
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:731756
    zf-H2C2_2; Zinc-finger double domain
    cl00084
    Location:374427
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
  3. XM_031903367.1XP_031759227.1  zinc finger E-box-binding homeobox 1 isoform X2

    Related
    ENSXETP00000025489.5, ENSXETT00000025489.5
    Conserved Domains (6) summary
    smart00355
    Location:189211
    ZnF_C2H2; zinc finger
    sd00017
    Location:883903
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:229251
    zf-C2H2; Zinc finger, C2H2 type
    pfam08690
    Location:47159
    GET2; GET complex subunit GET2
    pfam13465
    Location:923948
    zf-H2C2_2; Zinc-finger double domain
    cl00084
    Location:566619
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
  4. XM_012964653.3XP_012820107.1  zinc finger E-box-binding homeobox 1 isoform X3

    Conserved Domains (4) summary
    sd00017
    Location:691711
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:3759
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:731756
    zf-H2C2_2; Zinc-finger double domain
    cl00084
    Location:374427
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
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