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LOC5507996 endoribonuclease Dicer [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 5507996, updated on 20-Mar-2021

Summary

Gene symbol
LOC5507996
Gene description
endoribonuclease Dicer
Locus tag
NEMVEDRAFT_v1g119416
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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Genomic context

See LOC5507996 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834253.1 (145490..158026, complement)

NW_001834253.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC5507995 Neighboring gene proteasome subunit alpha type-3 Neighboring gene galanin receptor type 3 Neighboring gene alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 Neighboring gene transfer RNA glycine (anticodon CCC)

Genomic regions, transcripts, and products

Genomic Sequence:
NW_001834253 Unplaced Scaffold Reference ASM20922v1

General protein information

Preferred Names
endoribonuclease Dicer
Names
dicer 2
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM20922v1

Genomic

  1. NW_001834253.1 Reference ASM20922v1

    Range
    145490..158026 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032376734.1XP_032232625.1  endoribonuclease Dicer isoform X2

    Conserved Domains (5) summary
    cd00593
    Location:15751747
    RIBOc; Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional ...
    cl38915
    Location:453505
    DEAD-like_helicase_C; C-terminal helicase domain of the DEAD-like helicases
    pfam03368
    Location:565668
    Dicer_dimer; Dicer dimerization domain
    cl00054
    Location:17521814
    DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
    cl00301
    Location:9261009
    PAZ; PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a ...
  2. XM_032376733.1XP_032232624.1  endoribonuclease Dicer isoform X1

    Conserved Domains (5) summary
    cd00593
    Location:16371809
    RIBOc; Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional ...
    cl38915
    Location:453505
    DEAD-like_helicase_C; C-terminal helicase domain of the DEAD-like helicases
    pfam03368
    Location:565668
    Dicer_dimer; Dicer dimerization domain
    cl00054
    Location:18141876
    DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
    cl00301
    Location:9881071
    PAZ; PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a ...
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