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LOC5511185 cartilage oligomeric matrix protein [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 5511185, updated on 30-Nov-2023

Summary

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Gene symbol
LOC5511185
Gene description
cartilage oligomeric matrix protein
Locus tag
NEMVEDRAFT_v1g168100
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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Genomic context

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Location:
chromosome: 5
Exon count:
29
Annotation release Status Assembly Chr Location
101 current jaNemVect1.1 (GCF_932526225.1) 5 NC_064038.1 (6075564..6120589)
100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834315.1 (319234..364681, complement)

Chromosome 5 - NC_064038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116617589 Neighboring gene zinc finger protein 77 Neighboring gene DDB1- and CUL4-associated factor 12 Neighboring gene RING finger protein 224 Neighboring gene uncharacterized LOC5513197 Neighboring gene proline-rich P65 protein homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A thrombospondin in the anthozoan Nematostella vectensis is associated with the nervous system and upregulated during regeneration. Tucker RP, et al. Biol Open, 2013 Feb 15. PMID 23430283, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cartilage oligomeric matrix protein
Names
predicted protein
thrombospondin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference jaNemVect1.1

Genomic

  1. NC_064038.1 Reference jaNemVect1.1

    Range
    6075564..6120589
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048727434.1 → XP_048583391.1  cartilage oligomeric matrix protein isoform X2

  2. XM_048727437.1 → XP_048583394.1  cartilage oligomeric matrix protein isoform X5

  3. XM_048727429.1 → XP_048583386.1  cartilage oligomeric matrix protein isoform X1

  4. XM_048727428.1 → XP_048583385.1  cartilage oligomeric matrix protein isoform X1

  5. XM_048727436.1 → XP_048583393.1  cartilage oligomeric matrix protein isoform X4

  6. XM_048727433.1 → XP_048583390.1  cartilage oligomeric matrix protein isoform X1

  7. XM_048727435.1 → XP_048583392.1  cartilage oligomeric matrix protein isoform X3

  8. XM_048727431.1 → XP_048583388.1  cartilage oligomeric matrix protein isoform X1

  9. XM_048727430.1 → XP_048583387.1  cartilage oligomeric matrix protein isoform X1

  10. XM_048727432.1 → XP_048583389.1  cartilage oligomeric matrix protein isoform X1

Nucleotide Protein
Heading Accession and Version

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