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LOC5516024 CDK-activating kinase assembly factor MAT1 [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 5516024, updated on 30-Nov-2023

Summary

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Gene symbol
LOC5516024
Gene description
CDK-activating kinase assembly factor MAT1
Locus tag
NEMVEDRAFT_v1g241252
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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Genomic context

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Location:
chromosome: 7
Exon count:
8
Annotation release Status Assembly Chr Location
101 current jaNemVect1.1 (GCF_932526225.1) 7 NC_064040.1 (16375421..16379798)
100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834372.1 (1020936..1025503, complement)

Chromosome 7 - NC_064040.1Genomic Context describing neighboring genes Neighboring gene protein FRG1 Neighboring gene protein crumbs homolog 1-like Neighboring gene ATP-dependent RNA helicase TDRD9 Neighboring gene ATP synthase subunit s, mitochondrial Neighboring gene pinin Neighboring gene small Cajal body-specific RNA 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cyclin-dependent protein serine/threonine kinase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cyclin-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIH holo complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CDK-activating kinase assembly factor MAT1
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference jaNemVect1.1

Genomic

  1. NC_064040.1 Reference jaNemVect1.1

    Range
    16375421..16379798
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001636124.3 → XP_001636174.1  CDK-activating kinase assembly factor MAT1

    See identical proteins and their annotated locations for XP_001636174.1

    UniProtKB/TrEMBL
    A7RWZ3
    Conserved Domains (2) summary
    TIGR00570
    Location:1 → 303
    cdk7; CDK-activating kinase assembly factor MAT1
    cl17238
    Location:3 → 47
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
Nucleotide Protein
Heading Accession and Version

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