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LOC5517926 endothelial PAS domain-containing protein 1 [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 5517926, updated on 20-Mar-2021

Summary

Gene symbol
LOC5517926
Gene description
endothelial PAS domain-containing protein 1
Locus tag
NEMVEDRAFT_v1g161959
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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Genomic context

See LOC5517926 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834388.1 (275129..286165, complement)

NW_001834388.1Genomic Context describing neighboring genes Neighboring gene deleted in lung and esophageal cancer protein 1 Neighboring gene uncharacterized LOC5517925 Neighboring gene KAT8 regulatory NSL complex subunit 1 Neighboring gene melanopsin-like Neighboring gene uncharacterized LOC5517927

Genomic regions, transcripts, and products

Genomic Sequence:
NW_001834388 Unplaced Scaffold Reference ASM20922v1

General protein information

Preferred Names
endothelial PAS domain-containing protein 1
Names
hypoxia inducible factor
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM20922v1

Genomic

  1. NW_001834388.1 Reference ASM20922v1

    Range
    275129..286165 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032362465.1XP_032218356.1  endothelial PAS domain-containing protein 1

    Conserved Domains (4) summary
    smart00091
    Location:94151
    PAS; PAS domain
    cd11433
    Location:1471
    bHLH-PAS_HIF; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in hypoxia-inducible factor (HIF) family
    pfam08778
    Location:637667
    HIF-1a_CTAD; HIF-1 alpha C terminal transactivation domain
    pfam14598
    Location:267368
    PAS_11; PAS domain
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