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LOC5518880 general transcription and DNA repair factor IIH helicase subunit XPD [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 5518880, updated on 30-Nov-2023

Summary

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Gene symbol
LOC5518880
Gene description
general transcription and DNA repair factor IIH helicase subunit XPD
Locus tag
NEMVEDRAFT_v1g180316
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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Genomic context

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Location:
chromosome: 7
Exon count:
30
Annotation release Status Assembly Chr Location
101 current jaNemVect1.1 (GCF_932526225.1) 7 NC_064040.1 (10807298..10828216, complement)
100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834396.1 (180713..204901)

Chromosome 7 - NC_064040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125568255 Neighboring gene uncharacterized LOC5518875 Neighboring gene uncharacterized LOC116602330 Neighboring gene uncharacterized LOC116602335 Neighboring gene sphingosine 1-phosphate receptor 3-like Neighboring gene retinol dehydrogenase 11 Neighboring gene cation channel sperm-associated auxiliary subunit epsilon

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair, DNA duplex unwinding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of mitotic recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
general transcription and DNA repair factor IIH helicase subunit XPD
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference jaNemVect1.1

Genomic

  1. NC_064040.1 Reference jaNemVect1.1

    Range
    10807298..10828216 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001638767.3 → XP_001638817.3  general transcription and DNA repair factor IIH helicase subunit XPD

Nucleotide Protein
Heading Accession and Version

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