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LOC5519986 transcription initiation factor IIA subunit 2 [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 5519986, updated on 30-Nov-2023

Summary

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Gene symbol
LOC5519986
Gene description
transcription initiation factor IIA subunit 2
Locus tag
NEMVEDRAFT_v1g67237
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
101 current jaNemVect1.1 (GCF_932526225.1) 3 NC_064036.1 (11497592..11500204)
100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834403.1 (701511..704132)

Chromosome 3 - NC_064036.1Genomic Context describing neighboring genes Neighboring gene UDP-N-acetylhexosamine pyrophosphorylase Neighboring gene protein YIPF3 Neighboring gene uncharacterized LOC116603553 Neighboring gene serine protease 23 Neighboring gene uncharacterized LOC116603554

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables TBP-class protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA polymerase II preinitiation complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor IIA subunit 2
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference jaNemVect1.1

Genomic

  1. NC_064036.1 Reference jaNemVect1.1

    Range
    11497592..11500204
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001639798.2 → XP_001639848.2  transcription initiation factor IIA subunit 2

    UniProtKB/TrEMBL
    A7RL28
    Conserved Domains (1) summary
    COG5123
    Location:3 → 99
    TOA2; Transcription initiation factor IIA, gamma subunit [Transcription]
Nucleotide Protein
Heading Accession and Version

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