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LOC5521566 general transcription factor IIH subunit 1-like [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 5521566, updated on 30-Nov-2023

Summary

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Gene symbol
LOC5521566
Gene description
general transcription factor IIH subunit 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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Genomic context

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Location:
chromosome: 6
Exon count:
16
Annotation release Status Assembly Chr Location
101 current jaNemVect1.1 (GCF_932526225.1) 6 NC_064039.1 (6006210..6013728, complement)
100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834410.1 (1436115..1443188, complement)

Chromosome 6 - NC_064039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC5521565 Neighboring gene X-ray repair cross-complementing protein 6 Neighboring gene uncharacterized LOC5521436 Neighboring gene uncharacterized LOC116604449 Neighboring gene acyl-CoA synthetase short-chain family member 3, mitochondrial Neighboring gene uncharacterized LOC116604448 Neighboring gene DNA polymerase delta catalytic subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription by RNA polymerase I IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIH core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription factor TFIIH holo complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
general transcription factor IIH subunit 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference jaNemVect1.1

Genomic

  1. NC_064039.1 Reference jaNemVect1.1

    Range
    6006210..6013728 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048729290.1 → XP_048585247.1  general transcription factor IIH subunit 1-like

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases