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lmo3 LIM domain only 3 [ Danio rerio (zebrafish) ]

Gene ID: 553774, updated on 16-Oct-2021

Summary

Official Symbol
lmo3provided by ZNC
Official Full Name
LIM domain only 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-050522-201
See related
Ensembl:ENSDARG00000008720
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
LMO-3; lmo3b; zgc:110149
Orthologs
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Genomic context

See lmo3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (12612465..12679290)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (12613621..12680441)
103 previous assembly Zv9 (GCF_000002035.4) 4 NC_007115.5 (11676869..11743814)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene Rho guanine nucleotide exchange factor (GEF) 39 Neighboring gene uncharacterized LOC103910417 Neighboring gene microsomal glutathione S-transferase 1.1 Neighboring gene microsomal glutathione S-transferase 1.2

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Homology

Clone Names

  • MGC110149

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001020739.2NP_001018575.1  LIM domain only protein 3 isoform 2

    See identical proteins and their annotated locations for NP_001018575.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
    Source sequence(s)
    AL954848
    UniProtKB/Swiss-Prot
    Q503U0
    Related
    ENSDARP00000015268.6, ENSDART00000003583.8
    Conserved Domains (2) summary
    cd09388
    Location:1367
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cl02475
    Location:77131
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
  2. NM_001328595.1NP_001315524.1  LIM domain only protein 3 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AL954848, EH435155
    UniProtKB/TrEMBL
    B0R1F5
    Related
    ENSDARP00000098627.2, ENSDART00000112860.3
    Conserved Domains (2) summary
    cd09388
    Location:3589
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:99153
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    12612465..12679290
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005164631.4XP_005164688.1  LIM domain only protein 3 isoform X1

    See identical proteins and their annotated locations for XP_005164688.1

    UniProtKB/TrEMBL
    A0A0R4IKA1
    Conserved Domains (2) summary
    cd09388
    Location:2579
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:89143
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
  2. XM_005164633.4XP_005164690.1  LIM domain only protein 3 isoform X3

    See identical proteins and their annotated locations for XP_005164690.1

    UniProtKB/Swiss-Prot
    Q503U0
    Related
    ENSDARP00000152478.1, ENSDART00000181201.1
    Conserved Domains (2) summary
    cd09388
    Location:1367
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cl02475
    Location:77131
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
  3. XM_021475015.1XP_021330690.1  LIM domain only protein 3 isoform X2

    Conserved Domains (2) summary
    cd09388
    Location:2478
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:88142
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
  4. XM_005164630.4XP_005164687.1  LIM domain only protein 3 isoform X1

    See identical proteins and their annotated locations for XP_005164687.1

    UniProtKB/TrEMBL
    A0A0R4IKA1
    Conserved Domains (2) summary
    cd09388
    Location:2579
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:89143
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
  5. XM_005164629.3XP_005164686.1  LIM domain only protein 3 isoform X1

    See identical proteins and their annotated locations for XP_005164686.1

    UniProtKB/TrEMBL
    A0A0R4IKA1
    Conserved Domains (2) summary
    cd09388
    Location:2579
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:89143
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394553.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    247165..310386
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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