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anxa13l annexin A13, like [ Danio rerio (zebrafish) ]

Gene ID: 554118, updated on 11-Apr-2024

Summary

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Official Symbol
anxa13lprovided by ZNC
Official Full Name
annexin A13, likeprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050522-310
See related
Ensembl:ENSDARG00000013613 AllianceGenome:ZFIN:ZDB-GENE-050522-310
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:112421
Summary
Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm. Is expressed in basal plate midbrain region and nervous system. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (9821731..9842240)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (10023912..10044416)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene phosphate cytidylyltransferase 1A, choline a Neighboring gene adaptor related protein complex 2 subunit mu 1a Neighboring gene si:ch211-252f13.5 Neighboring gene abl-interactor 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Identification and functional characterization of AP-2 complex subunit mu-A as a new member of antimicrobial protein. Gong Y, et al. Dev Comp Immunol, 2021 Aug. PMID 33848529
  2. A new mib allele with a chromosomal deletion covering foxc1a exhibits anterior somite specification defect. Hsu CH, et al. Sci Rep, 2015 Jun 3. PMID 26039894, Free PMC Article
  3. The African coelacanth genome provides insights into tetrapod evolution. Amemiya CT, et al. Nature, 2013 Apr 18. PMID 23598338, Free PMC Article
  4. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables calcium-dependent phospholipid binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
  
enables phosphatidylserine binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in vesicle membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
annexin A13; annexin A13, like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024414.1 → NP_001019585.1  annexin A13, like

    See identical proteins and their annotated locations for NP_001019585.1

    Status: PROVISIONAL

    Source sequence(s)
    BC095812
    UniProtKB/TrEMBL
    Q4VBH6
    Related
    ENSDARP00000025377.8, ENSDART00000018408.11
    Conserved Domains (1) summary
    pfam00191
    Location:19 → 83
    Annexin; Annexin

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    9821731..9842240
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005171170.4 → XP_005171227.1  annexin A13 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BIE3
    Conserved Domains (1) summary
    pfam00191
    Location:248 → 313
    Annexin; Annexin

  2. XM_021480424.1 → XP_021336099.1  annexin A13 isoform X2

    UniProtKB/TrEMBL
    A0A8M9QEV5
    Related
    ENSDARP00000116405.1, ENSDART00000148227.3
    Conserved Domains (1) summary
    pfam00191
    Location:192 → 255
    Annexin
Nucleotide Protein Strain
Heading Accession and Version

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