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si:dkey-14d8.20 si:dkey-14d8.20 [ Danio rerio (zebrafish) ]

Gene ID: 558392, updated on 6-May-2021

Summary

Official Symbol
si:dkey-14d8.20provided by ZNC
Official Full Name
si:dkey-14d8.20provided by ZNC
Primary source
ZFIN:ZDB-GENE-041210-146
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
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Genomic context

See si:dkey-14d8.20 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
13
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (5389273..5403684)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (5379956..5394846)
103 previous assembly Zv9 (GCF_000002035.4) 4 NC_007115.5 (5261298..5290279)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101884589 Neighboring gene uncharacterized LOC108183607 Neighboring gene selenoprotein O2 Neighboring gene scavenger receptor cysteine-rich domain-containing group B protein-like Neighboring gene uncharacterized LOC103910380 Neighboring gene uncharacterized LOC101884690

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables scavenger receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables serine-type endopeptidase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in zymogen activation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
deleted in malignant brain tumors 1 protein; uncharacterized protein LOC558392

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    5389273..5403684
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017355445.2XP_017210934.1  deleted in malignant brain tumors 1 protein isoform X1

    UniProtKB/TrEMBL
    A0A0R4IT38
  2. XM_017355446.2XP_017210935.1  deleted in malignant brain tumors 1 protein isoform X2

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