Format

Send to:

Choose Destination

tamalin trafficking regulator and scaffold protein tamalin [ Danio rerio (zebrafish) ]

Gene ID: 558950, updated on 25-Jan-2022

Summary

Official Symbol
tamalinprovided by ZNC
Official Full Name
trafficking regulator and scaffold protein tamalinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060312-30
See related
Ensembl:ENSDARG00000000588 AllianceGenome:ZFIN:ZDB-GENE-060312-30
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
grasp; graspl; zgc:136876
Summary
Orthologous to human TAMALIN (trafficking regulator and scaffold protein tamalin). [provided by Alliance of Genome Resources, Nov 2021]
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See tamalin in Genome Data Viewer
Location:
chromosome: 23
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (32199588..32235999, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (32273057..32309468, complement)
103 previous assembly Zv9 (GCF_000002035.4) 23 NC_007134.5 (32438167..32474578, complement)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene reprimo, TP53 dependent G2 arrest mediator homolog 3 Neighboring gene nuclear receptor subfamily 4, group A, member 1 Neighboring gene uncharacterized LOC103909698 Neighboring gene diacylglycerol kinase, alpha a Neighboring gene ring finger protein 41

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Homology

Clone Names

  • MGC136876

General protein information

Preferred Names
general receptor for phosphoinositides 1-associated scaffold protein
Names
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein like

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001039924.1NP_001035013.1  general receptor for phosphoinositides 1-associated scaffold protein

    See identical proteins and their annotated locations for NP_001035013.1

    Status: PROVISIONAL

    Source sequence(s)
    BC114298
    UniProtKB/TrEMBL
    Q29RA7
    Related
    ENSDARP00000094120.2, ENSDART00000103343.3
    Conserved Domains (1) summary
    cd00992
    Location:90175
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    32199588..32235999 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395161.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    164007..197198 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center