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Rbm38 RNA binding motif protein 38 [ Mus musculus (house mouse) ]

Gene ID: 56190, updated on 28-Jun-2021

Summary

Official Symbol
Rbm38provided by MGI
Official Full Name
RNA binding motif protein 38provided by MGI
Primary source
MGI:MGI:1889294
See related
Ensembl:ENSMUSG00000027510
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rn; Seb; Seb4; Rnpc1; Seb4l
Expression
Broad expression in thymus adult (RPKM 258.6), spleen adult (RPKM 239.1) and 19 other tissues See more
Orthologs
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Genomic context

See Rbm38 in Genome Data Viewer
Location:
2; 2 H3
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (172863680..172876527)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (173021891..173034734)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (172847403..172860235)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 52538 Neighboring gene SPO11 initiator of meiotic double stranded breaks Neighboring gene ribonucleic acid export 1 Neighboring gene VISTA enhancer mm92 Neighboring gene predicted gene, 36337

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables mRNA 3'-UTR binding ISO
Inferred from Sequence Orthology
more info
 
enables mRNA binding IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables mRNA binding ISO
Inferred from Sequence Orthology
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
RNA-binding protein 38
Names
RNA-binding region (RNP1, RRM) containing 1
RNA-binding region-containing protein 1
seb4 mRNA
ssDNA-binding protein SEB4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_019547.2NP_062420.2  RNA-binding protein 38

    See identical proteins and their annotated locations for NP_062420.2

    Status: VALIDATED

    Source sequence(s)
    AI573584, AK162141, DV644612, DV653380
    Consensus CDS
    CCDS17139.1
    UniProtKB/Swiss-Prot
    Q62176
    Related
    ENSMUSP00000029014.10, ENSMUST00000029014.16
    Conserved Domains (1) summary
    cd12384
    Location:32107
    RRM_RBM24_RBM38_like; RNA recognition motif in eukaryotic RNA-binding protein RBM24, RBM38 and similar proteins

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    172863680..172876527
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006499924.5XP_006499987.1  RNA-binding protein 38 isoform X1

    See identical proteins and their annotated locations for XP_006499987.1

    Conserved Domains (1) summary
    cl17169
    Location:1128
    RRM_SF; RNA recognition motif (RRM) superfamily
  2. XM_030251891.1XP_030107751.1  RNA-binding protein 38 isoform X1

    Conserved Domains (1) summary
    cl17169
    Location:1128
    RRM_SF; RNA recognition motif (RRM) superfamily
  3. XM_030251892.1XP_030107752.1  RNA-binding protein 38 isoform X1

    Related
    ENSMUST00000155512.8
    Conserved Domains (1) summary
    cl17169
    Location:1128
    RRM_SF; RNA recognition motif (RRM) superfamily
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