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gpnmb glycoprotein (transmembrane) nmb [ Danio rerio (zebrafish) ]

Gene ID: 563348, updated on 6-May-2021

Summary

Official Symbol
gpnmbprovided by ZNC
Official Full Name
glycoprotein (transmembrane) nmbprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060503-106
See related
Ensembl:ENSDARG00000062688
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-155k24.6
Orthologs
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Genomic context

See gpnmb in Genome Data Viewer
Location:
chromosome: 19
Exon count:
12
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (20248695..20270191, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (20666946..20685853, complement)
103 previous assembly Zv9 (GCF_000002035.4) 19 NC_007130.5 (20733269..20752480, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene transformer 2 alpha homolog Neighboring gene insulin-like growth factor 2 mRNA binding protein 3 Neighboring gene oxidoreductase NAD-binding domain containing 1 Neighboring gene raftlin, lipid raft linker 1a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables integrin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
transmembrane glycoprotein NMB

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    20248695..20270191 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009294247.3XP_009292522.1  transmembrane glycoprotein NMB isoform X1

    Related
    ENSDARP00000085316.5, ENSDART00000090883.6
    Conserved Domains (1) summary
    pfam00801
    Location:250317
    PKD; PKD domain
  2. XM_686712.9XP_691804.2  transmembrane glycoprotein NMB isoform X2

    UniProtKB/TrEMBL
    E7F7J7
    Related
    ENSDARP00000119730.2, ENSDART00000144891.3
    Conserved Domains (1) summary
    pfam00801
    Location:244311
    PKD; PKD domain
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