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B4galt6 UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6 [ Mus musculus (house mouse) ]

Gene ID: 56386, updated on 23-Jun-2021

Summary

Official Symbol
B4galt6provided by MGI
Official Full Name
UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6provided by MGI
Primary source
MGI:MGI:1928380
See related
Ensembl:ENSMUSG00000056124
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AA536803; AU022389
Expression
Broad expression in small intestine adult (RPKM 16.5), duodenum adult (RPKM 16.3) and 23 other tissues See more
Orthologs
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Genomic context

See B4galt6 in Genome Data Viewer
Location:
18; 18 A2
Exon count:
10
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (20817656..20879461, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (20684599..20746404, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (20843100..20904905, complement)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene predicted gene 16090 Neighboring gene ribosomal protein L35 pseudogene Neighboring gene transthyretin Neighboring gene predicted gene, 31437 Neighboring gene trafficking protein particle complex 8 Neighboring gene ring finger protein 125

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity ISO
Inferred from Sequence Orthology
more info
 
enables galactosyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables galactosyltransferase activity ISO
Inferred from Sequence Orthology
more info
PubMed 
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables transferase activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
beta-1,4-galactosyltransferase 6
Names
UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 6
UDP-Gal:glucosylceramide beta-1,4-galactosyltransferase
UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 6
b4Gal-T6
beta-1, 4-galactosyltransferase VI
beta-1,4-GalTase 6
beta4Gal-T6
glucosylceramide beta-1,4-galactosyltransferase
lacCer synthase
lactosylceramide synthase
NP_062711.1
XP_030106406.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_019737.2NP_062711.1  beta-1,4-galactosyltransferase 6

    See identical proteins and their annotated locations for NP_062711.1

    Status: VALIDATED

    Source sequence(s)
    AC129078, AF097158
    Consensus CDS
    CCDS29086.1
    UniProtKB/Swiss-Prot
    Q9WVK5
    UniProtKB/TrEMBL
    Q3UUA9
    Related
    ENSMUSP00000066515.6, ENSMUST00000070080.6
    Conserved Domains (1) summary
    cd00899
    Location:155371
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    20817656..20879461 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030250546.2XP_030106406.1  beta-1,4-galactosyltransferase 6 isoform X1

    Conserved Domains (1) summary
    cd00899
    Location:111327
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids
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