slc2a11b solute carrier family 2 member 11b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: slc2a11bprovided by ZNC
Official Full Name: solute carrier family 2 member 11bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-070705-96
See related: Ensembl:ENSDARG00000063288 AllianceGenome:ZFIN:ZDB-GENE-070705-96
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fc06b08; wu:fc06b08; si:ch211-207k7.1; si:ch73-266o15.1
Summary: Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; gill; heart; integument; and kidney. Orthologous to human SLC2A11 (solute carrier family 2 member 11). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 5

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (10014604..10046183)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (9509966..9541545)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Markers

fc06b08.x1 (e-PCR)
- UniSTS:192234

fc06b08.x1 (e-PCR)
- UniSTS:192235

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables hexose transmembrane transporter activity	IBA Inferred from Biological aspect of Ancestor more info
enables transmembrane transporter activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within carbohydrate transport	IEA Inferred from Electronic Annotation more info
involved_in monosaccharide transmembrane transport	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within transmembrane transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: solute carrier family 2 (facilitated glucose transporter), member 11b; solute carrier family 2, facilitated glucose transporter member 11b

Names: zglut11b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001114430.1 → NP_001107902.1 solute carrier family 2, facilitated glucose transporter member 11b

See identical proteins and their annotated locations for NP_001107902.1

Status: PROVISIONAL

Source sequence(s)

BC157382

UniProtKB/TrEMBL

A0A0R4IHR9, A0A8N7UYQ7, A9ULS7

Related

ENSDARP00000086765.4, ENSDART00000092333.6

Conserved Domains (2) summary

cd06174
Location:80 → 468

MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...

pfam00083
Location:36 → 483

Sugar_tr; Sugar (and other) transporter

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007116.7 Reference GRCz11 Primary Assembly

Range

10014604..10046183

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005165031.4 → XP_005165088.1 solute carrier family 2 (facilitated glucose transporter), member 11b isoform X1

UniProtKB/TrEMBL

A0A8M2BCB4

Conserved Domains (2) summary

cd06174
Location:98 → 486

MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...

pfam00083
Location:54 → 501

Sugar_tr; Sugar (and other) transporter