Format

Send to:

Choose Destination

fgl2a fibrinogen-like 2a [ Danio rerio (zebrafish) ]

Gene ID: 565637, updated on 25-Jan-2022

Summary

Official Symbol
fgl2aprovided by ZNC
Official Full Name
fibrinogen-like 2aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-9506
See related
Ensembl:ENSDARG00000019861 AllianceGenome:ZFIN:ZDB-GENE-030131-9506
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fgl2; wu:fj83c10; zgc:136619; si:ch211-276e22.3
Summary
Predicted to enable signaling receptor binding activity. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Orthologous to human FGL2 (fibrinogen like 2). [provided by Alliance of Genome Resources, Nov 2021]
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See fgl2a in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (20178694..20181964, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (20457719..20460989, complement)
103 previous assembly Zv9 (GCF_000002035.4) 4 NC_007115.5 (19114384..19117654, complement)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 17 Neighboring gene coiled-coil domain containing 146 Neighboring gene siaz-interacting nuclear protein Neighboring gene golgin subfamily A member 6-like protein 1 Neighboring gene gamma-secretase activating protein Neighboring gene serine/threonine kinase 38 like Neighboring gene leucine-rich repeats and transmembrane domains 2a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables peptidase activity IEA
Inferred from Electronic Annotation
more info
 
enables signaling receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in collagen-containing extracellular matrix IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
fibrinogen-like 2a
Names
fibrinogen-like 2

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025539.2NP_001020710.1  fibrinogen-like 2a precursor

    See identical proteins and their annotated locations for NP_001020710.1

    Status: PROVISIONAL

    Source sequence(s)
    BX855588
    UniProtKB/TrEMBL
    Q5TYU3
    Related
    ENSDARP00000023829.6, ENSDART00000022539.8
    Conserved Domains (1) summary
    cd00087
    Location:219447
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    20178694..20181964 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center