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nicol1 NELL2 interacting cell ontogeny regulator 1 [ Danio rerio (zebrafish) ]

Gene ID: 566718, updated on 27-Mar-2024

Summary

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Official Symbol
nicol1provided by ZNC
Official Full Name
NELL2 interacting cell ontogeny regulator 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-7914
See related
Ensembl:ENSDARG00000089877 AllianceGenome:ZFIN:ZDB-GENE-030131-7914
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fj40g07; wu:fj40g07; si:dkeyp-75h12.5
Summary
Predicted to be located in extracellular region. Orthologous to human C4orf48 (chromosome 4 open reading frame 48). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (24486239..24491892, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (24215082..24220735, complement)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene HAUS augmin-like complex, subunit 3 Neighboring gene polymerase (DNA directed) nu Neighboring gene N-acetyltransferase 8-like Neighboring gene negative elongation factor complex member A Neighboring gene fatty acid amide hydrolase 2b Neighboring gene bloodthirsty-related gene family, member 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Identification of possible downstream genes required for the extension of peripheral axons in primary sensory neurons. Aoki M, et al. Biochem Biophys Res Commun, 2014 Mar 7. PMID 24513284
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within neuropeptide signaling pathway IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
neuropeptide-like protein C4orf48; neuropeptide-like protein C4orf48 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001386636.1 → NP_001373565.1  neuropeptide-like protein C4orf48 precursor

    Status: VALIDATED

    Source sequence(s)
    CR318672
    UniProtKB/TrEMBL
    A0A8M9PKP2, E7FEX9
    Conserved Domains (1) summary
    pfam15161
    Location:21 → 81
    Neuropep_like; Neuropeptide-like

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    24486239..24491892 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_690005.5 → XP_695097.1  neuropeptide-like protein C4orf48 homolog

    UniProtKB/TrEMBL
    E7FEX9
    Related
    ENSDARP00000142883.1, ENSDART00000173903.2
    Conserved Domains (1) summary
    pfam15161
    Location:21 → 81
    Neuropep_like; Neuropeptide-like

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394689.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    130482..136215 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021471898.1 → XP_021327573.1  neuropeptide-like protein C4orf48 homolog

    Conserved Domains (1) summary
    pfam15161
    Location:21 → 81
    Neuropep_like; Neuropeptide-like
Nucleotide Protein Strain
Heading Accession and Version

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