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Tacstd2 tumor-associated calcium signal transducer 2 [ Mus musculus (house mouse) ]

Gene ID: 56753, updated on 16-Oct-2021

Summary

Official Symbol
Tacstd2provided by MGI
Official Full Name
tumor-associated calcium signal transducer 2provided by MGI
Primary source
MGI:MGI:1861606
See related
Ensembl:ENSMUSG00000051397
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ly97; EGP-1; TROP2; C80403; GA733-1
Orthologs
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Genomic context

See Tacstd2 in Genome Data Viewer
Location:
6; 6 C1
Exon count:
1
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (67511043..67512806, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (67534059..67535822, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (67484053..67485816, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene myc induced nuclear antigen pseudogene Neighboring gene predicted gene, 44083 Neighboring gene immunoglobulin kappa chain variable 2-137 Neighboring gene interleukin 23 receptor Neighboring gene immunoglobulin kappa chain complex

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1)  1 citation
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

Clone Names

  • MGC141612, MGC141613

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in basal plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in extracellular space IDA
Inferred from Direct Assay
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in lateral plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in membrane IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
tumor-associated calcium signal transducer 2
Names
cell surface glycoprotein Trop-2
lymphocyte antigen 97
tunor-associated calcium signal transducer 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020047.3NP_064431.2  tumor-associated calcium signal transducer 2 precursor

    See identical proteins and their annotated locations for NP_064431.2

    Status: VALIDATED

    Source sequence(s)
    AC124758
    Consensus CDS
    CCDS20221.1
    UniProtKB/Swiss-Prot
    Q8BGV3
    Related
    ENSMUSP00000060099.5, ENSMUST00000058178.6
    Conserved Domains (1) summary
    pfam00086
    Location:67139
    Thyroglobulin_1; Thyroglobulin type-1 repeat

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    67511043..67512806 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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