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Ascl3 achaete-scute family bHLH transcription factor 3 [ Mus musculus (house mouse) ]

Gene ID: 56787, updated on 23-Jun-2021

Summary

Official Symbol
Ascl3provided by MGI
Official Full Name
achaete-scute family bHLH transcription factor 3provided by MGI
Primary source
MGI:MGI:1928820
See related
Ensembl:ENSMUSG00000035951
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Sg; Sgn1; bHLHa; bHLHa42
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See Ascl3 in Genome Data Viewer
Location:
7 E3; 7 57.46 cM
Exon count:
2
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (109326672..109330939, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (109727465..109731732, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (116870979..116875246, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene VISTA enhancer mm1407 Neighboring gene A kinase (PRKA) interacting protein 1 Neighboring gene cDNA sequence BC051019 Neighboring gene predicted gene, 51493 Neighboring gene TMEM9 domain family, member B Neighboring gene RIKEN cDNA 4930431P19 gene Neighboring gene nuclear receptor interacting protein 3

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC129412, MGC129413

Gene Ontology Provided by MGI

Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
part_of transcription regulator complex IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
achaete-scute homolog 3
Names
ASH-3
ICRFP703B1614Q5.4
ICRFP703N2430Q5.4
achaete-scute complex homolog 3
achaete-scute complex homolog-like 3
bHLH transcriptional regulator Sgn-1
mASH-3
mASH3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020051.1NP_064435.1  achaete-scute homolog 3

    See identical proteins and their annotated locations for NP_064435.1

    Status: PROVISIONAL

    Source sequence(s)
    AJ400878
    Consensus CDS
    CCDS21737.1
    UniProtKB/Swiss-Prot
    Q9JJR7
    Related
    ENSMUSP00000037702.2, ENSMUST00000035372.3
    Conserved Domains (1) summary
    pfam00010
    Location:95145
    HLH; Helix-loop-helix DNA-binding domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    109326672..109330939 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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