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syde1 synapse defective Rho GTPase homolog 1 [ Danio rerio (zebrafish) ]

Gene ID: 568166, updated on 13-Jun-2020

Summary

Gene symbol
syde1
Gene description
synapse defective Rho GTPase homolog 1
See related
Ensembl:ENSDARG00000077440
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
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Genomic context

See syde1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (48581647..48623484)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (48590486..48632305)
103 previous assembly Zv9 (GCF_000002035.4) 12 NC_007123.5 (49873116..49915002)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108191761 Neighboring gene testis expressed 47 Neighboring gene uncharacterized LOC108191763 Neighboring gene cytochrome P450, family 4, subfamily F, polypeptide 3 Neighboring gene zgc:92749 Neighboring gene uncharacterized LOC100006699 Neighboring gene zgc:165653

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Homology

General protein information

Preferred Names
rho GTPase-activating protein SYDE1
Names
synapse defective 1, Rho GTPase, homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    48581647..48623484
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_691479.9XP_696571.6  rho GTPase-activating protein SYDE1

    Related
    ENSDARP00000098809.4, ENSDART00000114996.4
    Conserved Domains (1) summary
    cd04379
    Location:576804
    RhoGAP_SYD1; RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying ...
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