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Lgi1 leucine-rich repeat LGI family, member 1 [ Mus musculus (house mouse) ]

Gene ID: 56839, updated on 8-Jul-2021

Summary

Official Symbol
Lgi1provided by MGI
Official Full Name
leucine-rich repeat LGI family, member 1provided by MGI
Primary source
MGI:MGI:1861691
See related
Ensembl:ENSMUSG00000067242
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
BB130740
Expression
Biased expression in cortex adult (RPKM 19.4), frontal lobe adult (RPKM 15.9) and 5 other tissues See more
Orthologs
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Genomic context

See Lgi1 in Genome Data Viewer
Location:
19; 19 C3
Exon count:
9
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (38253135..38297387)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (38264687..38308939)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (38339272..38383429)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene FRA10AC1 homolog (human) Neighboring gene predicted gene, 32574 Neighboring gene predicted gene, 32491 Neighboring gene predicted gene, 32771 Neighboring gene predicted gene, 52382 Neighboring gene predicted gene 9886 Neighboring gene predicted gene, 32960

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in cell junction IEA
Inferred from Electronic Annotation
more info
 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in extracellular space IDA
Inferred from Direct Assay
more info
PubMed 
located_in extracellular space ISO
Inferred from Sequence Orthology
more info
 
is_active_in glutamatergic synapse IDA
Inferred from Direct Assay
more info
PubMed 
located_in glutamatergic synapse IDA
Inferred from Direct Assay
more info
PubMed 
located_in glutamatergic synapse IMP
Inferred from Mutant Phenotype
more info
PubMed 
located_in synapse ISO
Inferred from Sequence Orthology
more info
 
is_active_in synaptic cleft IDA
Inferred from Direct Assay
more info
PubMed 
located_in synaptic cleft IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
leucine-rich glioma-inactivated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020278.3NP_064674.1  leucine-rich glioma-inactivated protein 1 precursor

    See identical proteins and their annotated locations for NP_064674.1

    Status: VALIDATED

    Source sequence(s)
    BC066090, CJ133398
    Consensus CDS
    CCDS29786.1
    UniProtKB/Swiss-Prot
    Q9JIA1
    Related
    ENSMUSP00000143128.2, ENSMUST00000198518.5
    Conserved Domains (4) summary
    TIGR00864
    Location:146221
    PCC; polycystin cation channel protein
    sd00031
    Location:7192
    LRR_1; leucine-rich repeat [structural motif]
    pfam03736
    Location:317363
    EPTP; EPTP domain
    pfam13855
    Location:91151
    LRR_8; Leucine rich repeat

RNA

  1. NR_157558.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK031996, BC066090, CJ133398
    Related
    ENSMUST00000087252.12
  2. NR_157559.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC112153, AC116871

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    38253135..38297387
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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