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pomt1 protein-O-mannosyltransferase 1 [ Danio rerio (zebrafish) ]

Gene ID: 569769, updated on 22-Jun-2021

Summary

Official Symbol
pomt1provided by ZNC
Official Full Name
protein-O-mannosyltransferase 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-060929-966
See related
Ensembl:ENSDARG00000067670
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zPOMT1; zgc:153731
Orthologs
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Genomic context

See pomt1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
20
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (51111393..51128031)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (50464800..50481438)
103 previous assembly Zv9 (GCF_000002035.4) 5 NC_007116.5 (52797604..52814242)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 169 member Aa Neighboring gene zgc:194398 Neighboring gene coiled-coil domain containing 180 Neighboring gene caspase recruitment domain family, member 9 Neighboring gene small nuclear RNA activating complex, polypeptide 4

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Homology

Clone Names

  • MGC153731

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables dolichyl-phosphate-mannose-protein mannosyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables dolichyl-phosphate-mannose-protein mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
enables dolichyl-phosphate-mannose-protein mannosyltransferase activity IGI
Inferred from Genetic Interaction
more info
PubMed 
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
enables transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 
involved_in protein O-linked mannosylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within protein O-linked mannosylation IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
protein O-mannosyl-transferase 1
NP_001041532.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001048067.2NP_001041532.2  protein O-mannosyl-transferase 1

    See identical proteins and their annotated locations for NP_001041532.2

    Status: PROVISIONAL

    Source sequence(s)
    BC124440
    UniProtKB/Swiss-Prot
    F1QF89
    Related
    ENSDARP00000086435.4, ENSDART00000092002.5
    Conserved Domains (4) summary
    smart00472
    Location:436486
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    COG1928
    Location:27715
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
    pfam02366
    Location:27262
    PMT; Dolichyl-phosphate-mannose-protein mannosyltransferase
    pfam16192
    Location:515713
    PMT_4TMC; C-terminal four TMM region of protein-O-mannosyltransferase

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    51111393..51128031
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394610.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    242306..258944
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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