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Retnla resistin like alpha [ Mus musculus (house mouse) ]

Gene ID: 57262, updated on 5-Jul-2021

Summary

Official Symbol
Retnlaprovided by MGI
Official Full Name
resistin like alphaprovided by MGI
Primary source
MGI:MGI:1888504
See related
Ensembl:ENSMUSG00000061100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
RE; HIM; Xcp; Fizz; HIMF; Xcp2; Fizz-; Fizz1; RELMa; Fizz-1; RELMalpha; RELM-alpha; 1810019L16Rik
Expression
Biased expression in mammary gland adult (RPKM 357.7), subcutaneous fat pad adult (RPKM 170.8) and 3 other tissues See more
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Genomic context

See Retnla in Genome Data Viewer
Location:
16 B5; 16 30.75 cM
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (48662972..48664824)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (48842609..48844461)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (48842665..48844574)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene T cell receptor associated transmembrane adaptor 1 Neighboring gene TWIST neighbor pseudogene Neighboring gene resistin like beta Neighboring gene resistin like gamma Neighboring gene DAZ interacting protein 3, zinc finger Neighboring gene predicted gene, 22576

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables hormone activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in extracellular region IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
resistin-like alpha
Names
cysteine-rich secreted protein A12-gamma
cysteine-rich secreted protein FIZZ1
found in inflammatory zone 1
hypoxia-induced mitogenic factor
parasite-induced macrophage novel gene 1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020509.4NP_065255.3  resistin-like alpha precursor

    Status: VALIDATED

    Source sequence(s)
    AC154529
    Consensus CDS
    CCDS49864.2
    Related
    ENSMUSP00000159097.2, ENSMUST00000238847.2
    Conserved Domains (1) summary
    pfam06954
    Location:23110
    Resistin

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    48662972..48664824
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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