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Jph3 junctophilin 3 [ Mus musculus (house mouse) ]

Gene ID: 57340, updated on 23-Jun-2021

Summary

Official Symbol
Jph3provided by MGI
Official Full Name
junctophilin 3provided by MGI
Primary source
MGI:MGI:1891497
See related
Ensembl:ENSMUSG00000025318
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
JP-; Jp3; JP-3
Expression
Biased expression in cortex adult (RPKM 46.6), cerebellum adult (RPKM 35.8) and 5 other tissues See more
Orthologs
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Genomic context

See Jph3 in Genome Data Viewer
Location:
8; 8 E1
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (122457298..122517822)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (121730559..121791083)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (124254463..124314721)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene VISTA enhancer mm323 Neighboring gene predicted gene, 46065 Neighboring gene kelch domain containing 4 Neighboring gene predicted gene, 24283

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1)  1 citation
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • MGC124338, MGC124339, MGC124340

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in endoplasmic reticulum membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in endoplasmic reticulum membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in integral component of membrane TAS
Traceable Author Statement
more info
PubMed 
part_of junctional membrane complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of junctional membrane complex IDA
Inferred from Direct Assay
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
junctophilin-3
Names
junctophilin type 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020605.3NP_065630.1  junctophilin-3

    See identical proteins and their annotated locations for NP_065630.1

    Status: VALIDATED

    Source sequence(s)
    AB024449, AC121975, BY718602
    Consensus CDS
    CCDS22728.1
    UniProtKB/Swiss-Prot
    Q9ET77
    Related
    ENSMUSP00000026357.6, ENSMUST00000026357.12
    Conserved Domains (2) summary
    PLN03185
    Location:5144
    PLN03185; phosphatidylinositol phosphate kinase; Provisional
    pfam02493
    Location:311333
    MORN; MORN repeat

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    122457298..122517822
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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