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cst14a.1 cystatin 14a, tandem duplicate 1 [ Danio rerio (zebrafish) ]

Gene ID: 573769, updated on 6-May-2021

Summary

Official Symbol
cst14a.1provided by ZNC
Official Full Name
cystatin 14a, tandem duplicate 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-141031-1
See related
Ensembl:ENSDARG00000028164
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-161h7.6
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Genomic context

See cst14a.1 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (20916745..20918412)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (20772326..20773993)
103 previous assembly Zv9 (GCF_000002035.4) 24 NC_007135.5 (21525202..21526357)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene si:ch211-161h7.4 Neighboring gene si:ch211-161h7.5 Neighboring gene cystatin 14a, tandem duplicate 2 Neighboring gene mitochondrial matrix import factor 23

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables cysteine-type endopeptidase inhibitor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables cysteine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 
enables endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
cystatin 14a, tandem duplicate 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001316319.1NP_001303248.1  cystatin 14a, tandem duplicate 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the shorter transcript and encodes the supported protein.
    Source sequence(s)
    CR450812
    UniProtKB/TrEMBL
    E7EYW5
    Related
    ENSDARP00000043192.5, ENSDART00000043193.7
    Conserved Domains (1) summary
    pfam00031
    Location:677
    Cystatin; Cystatin domain

RNA

  1. NR_133011.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' structure compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    CR450812

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    20916745..20918412
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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