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tpm2 tropomyosin 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 594975, updated on 30-Sep-2021

Summary

Official Symbol
tpm2provided by Xenbase
Official Full Name
tropomyosin 2provided by Xenbase
Primary source
Xenbase:XB-GENE-6071381
See related
EnsemblRapid:ENSXETG00000003975 EnsemblRapid:ENSXETG00000009615
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
DA1; DA2B; TMSB; nem4; AMCD1; tpm2-a; tpm2-b; beta-TMad; beta-TMemb
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Genomic context

See tpm2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (216649549..216685461)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683989.1 (4698..26313)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene cAMP responsive element binding protein 3 Neighboring gene extensin-like Neighboring gene talin 1 Neighboring gene CUB and zona pellucida-like domain-containing protein 1 Neighboring gene IgGFc-binding protein-like

Genomic regions, transcripts, and products

General protein information

Preferred Names
tropomyosin 2
Names
b TMad
b TMemb
tropomyosin 2 (beta)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030416.1NP_001025587.1  tropomyosin 2

    See identical proteins and their annotated locations for NP_001025587.1

    Status: PROVISIONAL

    Source sequence(s)
    BC091033
    UniProtKB/TrEMBL
    Q5BKL2
    Related
    ENSXETP00000004351.1, ENSXETP00000118105.1, ENSXETT00000014343.1, ENSXETT00000110916.1
    Conserved Domains (1) summary
    pfam00261
    Location:48282
    Tropomyosin

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    216649549..216685461
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031900880.1XP_031756740.1  tropomyosin 2 isoform X3

    Related
    ENSXETP00000115095.1, ENSXETT00000117606.1
    Conserved Domains (1) summary
    pfam00261
    Location:48282
    Tropomyosin
  2. XM_031900876.1XP_031756736.1  tropomyosin 2 isoform X2

    Conserved Domains (1) summary
    pfam00261
    Location:48282
    Tropomyosin
  3. XM_031900872.1XP_031756732.1  tropomyosin 2 isoform X1

    Related
    ENSXETP00000114634.1, ENSXETT00000112193.1
    Conserved Domains (1) summary
    pfam00261
    Location:48282
    Tropomyosin
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