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iws1 IWS1, SUPT6H interacting protein [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 595082, updated on 5-Mar-2024

Summary

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Official Symbol
iws1provided by Xenbase
Official Full Name
IWS1, SUPT6H interacting proteinprovided by Xenbase
Primary source
Xenbase:XB-GENE-6458249
See related
Ensembl:ENSXETG00000002963
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (125573998..125588921)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (122013754..122028551)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 17 Neighboring gene myosin VIIB Neighboring gene protein C, inactivator of coagulation factors Va and VIIIa gene 2 Neighboring gene protein C, inactivator of coagulation factors Va and VIIIa

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Clone Names

  • MGC107786

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within RNA splicing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mRNA transport IEA
Inferred from Electronic Annotation
more info
  
involved_in poly(A)+ mRNA export from nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein IWS1 homolog
Names
IWS1 homolog
IWS1-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030519.1 → NP_001025690.1  protein IWS1 homolog

    See identical proteins and their annotated locations for NP_001025690.1

    Status: PROVISIONAL

    Source sequence(s)
    BC094537
    UniProtKB/Swiss-Prot
    Q505H7
    UniProtKB/TrEMBL
    A0A6I8Q4P0
    Related
    ENSXETP00000067341.2, ENSXETT00000104952.2
    Conserved Domains (2) summary
    PHA03307
    Location:16 → 312
    PHA03307; transcriptional regulator ICP4; Provisional
    cl00146
    Location:520 → 882
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    125573998..125588921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031901739.1 → XP_031757599.1  protein IWS1 homolog isoform X1

    UniProtKB/TrEMBL
    A0A5S6KA86, A0A5S6N556, A0A6I8Q4P0
    Related
    ENSXETP00000006464.5, ENSXETT00000006464.5
    Conserved Domains (2) summary
    NF033609
    Location:11 → 384
    MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
    cl00146
    Location:518 → 880
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q505H7.1 GenPept UniProtKB/Swiss-Prot:Q505H7

Gene LinkOut

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