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CLEC5A C-type lectin domain containing 5A [ Canis lupus familiaris (dog) ]

Gene ID: 609161, updated on 5-Mar-2024

Summary

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Official Symbol
CLEC5Aprovided by VGNC
Official Full Name
C-type lectin domain containing 5Aprovided by VGNC
Primary source
VGNC:VGNC:39334
See related
Ensembl:ENSCAFG00845030818
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 16
Exon count:
10
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 16 NC_051820.1 (7163928..7191422)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 16 NC_006598.4 (8101578..8129069)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 16 NC_049237.1 (7027385..7054887)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 16 NC_049276.1 (7117292..7144789)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 16 NC_049757.1 (6959777..6987277)

Chromosome 16 - NC_051820.1Genomic Context describing neighboring genes Neighboring gene maltase-glucoamylase Neighboring gene taste 2 receptor member 38 Neighboring gene olfactory receptor family 9 subfamily A member 4 Neighboring gene olfactory receptor family 9 subfamily A member 4C Neighboring gene olfactory receptor family 9 subfamily A member 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables virus receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C-type lectin domain family 5 member A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051820.1 Reference ROS_Cfam_1.0

    Range
    7163928..7191422
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038689066.1 → XP_038544994.1  C-type lectin domain family 5 member A isoform X2

    UniProtKB/TrEMBL
    A0A8I3QBX8, A0A8P0P5F4
    Related
    ENSCAFP00845043095.1, ENSCAFT00845054786.1
    Conserved Domains (1) summary
    cl02432
    Location:48 → 127
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  2. XM_038689065.1 → XP_038544993.1  C-type lectin domain family 5 member A isoform X1

    UniProtKB/TrEMBL
    A0A8I3QBX8, A0A8P0P5F4
    Conserved Domains (1) summary
    cl02432
    Location:68 → 147
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  3. XM_038689068.1 → XP_038544996.1  C-type lectin domain family 5 member A isoform X4

    Conserved Domains (2) summary
    cl02432
    Location:68 → 147
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl10017
    Location:25 → 79
    Tubulin_FtsZ_Cetz-like; Tubulin protein family of FtsZ and CetZ-like

  4. XM_038689067.1 → XP_038544995.1  C-type lectin domain family 5 member A isoform X3

    UniProtKB/TrEMBL
    A0A8C0QP61, A0A8I3Q5M0, A0A8P0S9G9
    Related
    ENSCAFP00845043106.1, ENSCAFT00845054798.1
    Conserved Domains (2) summary
    cd03593
    Location:68 → 181
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
    cl10017
    Location:25 → 79
    Tubulin_FtsZ_Cetz-like; Tubulin protein family of FtsZ and CetZ-like

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049276.1 Alternate UMICH_Zoey_3.1

    Range
    7117292..7144789
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038497029.1 → XP_038352957.1  C-type lectin domain family 5 member A isoform X2

    Conserved Domains (1) summary
    cl02432
    Location:48 → 127
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  2. XM_038497028.1 → XP_038352956.1  C-type lectin domain family 5 member A isoform X1

    Conserved Domains (1) summary
    cl02432
    Location:68 → 147
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  3. XM_038497031.1 → XP_038352959.1  C-type lectin domain family 5 member A isoform X4

    Conserved Domains (2) summary
    cl02432
    Location:68 → 147
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl10017
    Location:25 → 79
    Tubulin_FtsZ_Cetz-like; Tubulin protein family of FtsZ and CetZ-like

  4. XM_038497030.1 → XP_038352958.1  C-type lectin domain family 5 member A isoform X3

    Conserved Domains (2) summary
    cd03593
    Location:68 → 181
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
    cl10017
    Location:25 → 79
    Tubulin_FtsZ_Cetz-like; Tubulin protein family of FtsZ and CetZ-like

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049757.1 Alternate UNSW_CanFamBas_1.0

    Range
    6959777..6987277
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038623347.1 → XP_038479275.1  C-type lectin domain family 5 member A isoform X2

    Conserved Domains (1) summary
    cl02432
    Location:48 → 127
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  2. XM_038623346.1 → XP_038479274.1  C-type lectin domain family 5 member A isoform X1

    Conserved Domains (1) summary
    cl02432
    Location:68 → 147
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  3. XM_038623349.1 → XP_038479277.1  C-type lectin domain family 5 member A isoform X4

    Conserved Domains (2) summary
    cl02432
    Location:68 → 147
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl10017
    Location:25 → 79
    Tubulin_FtsZ_Cetz-like; Tubulin protein family of FtsZ and CetZ-like

  4. XM_038623348.1 → XP_038479276.1  C-type lectin domain family 5 member A isoform X3

    Conserved Domains (2) summary
    cd03593
    Location:68 → 181
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
    cl10017
    Location:25 → 79
    Tubulin_FtsZ_Cetz-like; Tubulin protein family of FtsZ and CetZ-like

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049237.1 Alternate UU_Cfam_GSD_1.0

    Range
    7027385..7054887
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038559367.1 → XP_038415295.1  C-type lectin domain family 5 member A isoform X2

    UniProtKB/TrEMBL
    A0A8I3QBX8, A0A8P0P5F4
    Conserved Domains (1) summary
    cl02432
    Location:48 → 127
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  2. XM_038559366.1 → XP_038415294.1  C-type lectin domain family 5 member A isoform X1

    UniProtKB/TrEMBL
    A0A8I3QBX8, A0A8P0P5F4
    Conserved Domains (1) summary
    cl02432
    Location:68 → 147
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  3. XM_038559369.1 → XP_038415297.1  C-type lectin domain family 5 member A isoform X4

    Conserved Domains (2) summary
    cl02432
    Location:68 → 147
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl10017
    Location:25 → 79
    Tubulin_FtsZ_Cetz-like; Tubulin protein family of FtsZ and CetZ-like

  4. XM_038559368.1 → XP_038415296.1  C-type lectin domain family 5 member A isoform X3

    UniProtKB/TrEMBL
    A0A8C0QP61, A0A8I3Q5M0, A0A8P0S9G9
    Conserved Domains (2) summary
    cd03593
    Location:68 → 181
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
    cl10017
    Location:25 → 79
    Tubulin_FtsZ_Cetz-like; Tubulin protein family of FtsZ and CetZ-like

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006598.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    8101578..8129069
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014119960.3 → XP_013975435.1  C-type lectin domain family 5 member A isoform X2

    UniProtKB/TrEMBL
    A0A8I3QBX8, A0A8P0P5F4
    Conserved Domains (1) summary
    cl02432
    Location:48 → 127
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  2. XM_014119959.3 → XP_013975434.1  C-type lectin domain family 5 member A isoform X1

    UniProtKB/TrEMBL
    A0A8I3QBX8, A0A8P0P5F4
    Conserved Domains (1) summary
    cl02432
    Location:68 → 147
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  3. XM_038452792.1 → XP_038308720.1  C-type lectin domain family 5 member A isoform X4

    Conserved Domains (2) summary
    cl02432
    Location:68 → 147
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl10017
    Location:25 → 79
    Tubulin_FtsZ_Cetz-like; Tubulin protein family of FtsZ and CetZ-like

  4. XM_846371.5 → XP_851464.3  C-type lectin domain family 5 member A isoform X3

    UniProtKB/TrEMBL
    A0A8C0QP61, A0A8I3Q5M0, A0A8P0S9G9
    Conserved Domains (2) summary
    cd03593
    Location:68 → 181
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
    cl10017
    Location:25 → 79
    Tubulin_FtsZ_Cetz-like; Tubulin protein family of FtsZ and CetZ-like
Nucleotide Protein
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