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sema3c semaphorin 3C [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 613059, updated on 5-Mar-2024

Summary

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Official Symbol
sema3cprovided by Xenbase
Official Full Name
semaphorin 3Cprovided by Xenbase
Primary source
Xenbase:XB-GENE-1014800
See related
Ensembl:ENSXETG00000007874
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
seme; semae
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
20
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (79143413..79232500, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (69542997..69628860, complement)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene CD36 molecule (thrombospondin receptor)-like Neighboring gene CD36 molecule Neighboring gene hepatocyte growth factor (hepapoietin A; scatter factor) Neighboring gene calcium channel, voltage-dependent, alpha 2/delta subunit 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
  
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within system development IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
semaphorin-3C
Names
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    79143413..79232500 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002933086.5 → XP_002933132.1  semaphorin-3C isoform X1

    UniProtKB/TrEMBL
    A0A6I8SC36, F7AQT4
    Related
    ENSXETP00000017222.3, ENSXETT00000017222.4
    Conserved Domains (3) summary
    cd05871
    Location:573 → 662
    Ig_Semaphorin_classIII; Immunoglobulin (Ig)-like domain of class III semaphorin
    cd11251
    Location:43 → 512
    Sema_3C; The Sema domain, a protein interacting module, of semaphorin 3C (Sema3C)
    smart00423
    Location:511 → 548
    PSI; domain found in Plexins, Semaphorins and Integrins

  2. XM_031899027.1 → XP_031754887.1  semaphorin-3C isoform X2

    UniProtKB/TrEMBL
    A0A6I8QK53, A0A6I8S1B8
    Related
    ENSXETP00000069726.2, ENSXETT00000093740.2
    Conserved Domains (3) summary
    cd11251
    Location:28 → 497
    Sema_3C; The Sema domain, a protein interacting module, of semaphorin 3C (Sema3C)
    smart00423
    Location:496 → 533
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd05871
    Location:557 → 647
    Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

  3. XM_004913029.4 → XP_004913086.1  semaphorin-3C isoform X3

    UniProtKB/TrEMBL
    A0A6I8SC36, A0A8J0QXX0
    Conserved Domains (3) summary
    cd11251
    Location:43 → 512
    Sema_3C; The Sema domain, a protein interacting module, of semaphorin 3C (Sema3C)
    smart00423
    Location:511 → 548
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl11960
    Location:573 → 616
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

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