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scd stearoyl-CoA desaturase (delta-9-desaturase) [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 613092, updated on 5-Mar-2024

Summary

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Official Symbol
scdprovided by Xenbase
Official Full Name
stearoyl-CoA desaturase (delta-9-desaturase)provided by Xenbase
Primary source
Xenbase:XB-GENE-988226
See related
Ensembl:ENSXETG00000023757
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
scd1; fads5; scdos
Orthologs
human all
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Genomic context

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Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (42442917..42465833)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (33075127..33098041)

Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene phosphatase domain containing paladin 1 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 14 Neighboring gene Wnt family member 8B Neighboring gene SEC31 homolog B, COPII coat complex component

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC108244

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables acyl-CoA desaturase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
stearoyl-CoA desaturase; acyl-CoA desaturase
NP_001027500.1
XP_012822130.1
XP_031760982.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001032329.1 → NP_001027500.1  stearoyl-CoA desaturase

    See identical proteins and their annotated locations for NP_001027500.1

    Status: PROVISIONAL

    Source sequence(s)
    BC096632
    UniProtKB/TrEMBL
    F6RR82, Q4V9Y3
    Related
    ENSXETP00000051240.3, ENSXETT00000051240.5
    Conserved Domains (1) summary
    cd03505
    Location:76 → 316
    Delta9-FADS-like; The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide ...

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    42442917..42465833
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031905122.1 → XP_031760982.1  acyl-CoA desaturase isoform X1

    UniProtKB/TrEMBL
    F6RR82, Q4V9Y3
    Conserved Domains (1) summary
    cd03505
    Location:76 → 316
    Delta9-FADS-like; The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide ...

  2. XM_012966676.3 → XP_012822130.1  acyl-CoA desaturase isoform X1

    See identical proteins and their annotated locations for XP_012822130.1

    UniProtKB/TrEMBL
    F6RR82, Q4V9Y3
    Conserved Domains (1) summary
    cd03505
    Location:76 → 316
    Delta9-FADS-like; The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide ...
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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